RNA id: XM_039819802.1


Basic Information

Item Value
RNA id XM_039819802.1
length 2815
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC120571114
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 32454197 ~ 32535677 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTCAGAGTCGGACAGtcgacagaagaagaagaaagcagCAGACAGTCGGTCTGCGGGCTGACACAAAGCCCAAAAACACGGTCCAACCGGCGGATAAAACAGTTTTCAAAGCGAGAGAAGAGTCTGGTTCCGTGACAATGTATTTCTTCGCAGTGTTTGTCCTTTTGGGGACAGGACTGGCGGTAAACGGCGAGATTCATTCCCTCACTTACATCTACACGGCCTTCTCCAAACCTGTCGACCTACCGGGCATCCACGAGTTCACAGCCATGGGTCTGCTCAACGGCAGGATGATCGACTACTTTGACAGCGACAACCAGAAGAAAGTTCCCAAACAGGCCTGGATGACAGAGCGACTGCCTGCAGATTACTGGGACAAAGGCACCCAGTCCCGCCAGAGCAAGCAGCAGTGGTTCAAAGTCAACATCGACATCCTGAAGGATCGAATGAGACAGAATGACACGGACCTCCATATTCTCCAGTGGAGGCACGGCTGCGAAGGCGAAATGAAGGACGGAGAGATTACGTTTATACGCGGCATTGACATGTACGGCTACGACGGAAACGACTTCCTGTCATTTGACAACGTCAACAGCGTCTGGGTCGCCTTTACTGACGCGGCAGTCCAGACCAAGAGAAAGTGGGATGAAGTCCAGGTCCTACAAGAATACACCAGAGGCTACCTGGAGAACGAGTGCATCGATTGGTTGGGGAAGTTCATCAATTATGGACAAAAACAGCTAGAAGAAACCAttCCAACGGTGCACCTGTTTGCAAAGAACACCACAGTTGAAGGAAATCTCCTTTTGACGTGCCTGGCCACAGGTTTCTTACCAAAAGATATCATCCTGAACATGAAAATCAATGGCAGTATTCTAACTGAAGCGGACGGAGTTGTGTCCTCTGGCGTCCGACCCAATGGTGACGAGACCTTCCAGAGACGAGATAGCGTGGAGATTTTACAGAGTGACTTGTCTAACTTCACCTGTGAAGTGATCCATCAGGCATCCAAGTTACATGTTGAGGAGGAGTGGGGGTCAAGTACATCTGGCAACAGCAGTTCAGATCAACCGCTTGATGCTGTTACTCCCTCCGgcaatAACGGCGGTAACAATGGCCCAGTCGTGTACCAACCTGTCCCCCAGGGTATGGTTTCAAAACACTCGGGCCAAACTGAGACGCTCCCTCACCGCCGATGACTCTCAGGTCAACTCGTCCTCCCCTCCCCAGAGAGGCGTAACCGTGGCGACTGGCTCCCCATCCCCATCCTGCTCCCCGTCCGACCAATCACAGCCCTTCTCTTCTAACTTCTTGATactcattttttaaaaatacacaAAGAGACCTTTCTACAGCCTATACCGTCTATTAAATCTGATTAATCAGTCCTTAAGACAATCCATTGTGCCATCAGAATGTAAGATGGCCGTGGTCACACCCATTTTTAAATCAGGTAAAAGATCAGATATGGCCAATTATCAGCCAATCAGTATTTTCAgaattcagaattgtgttgctgctgtctttctccatcatgcctgcagcctgcagcagcaggaagtcgcgaagccgagtgaagtgaaaataaatgaataaatggcggcatgcgaaaattaacgcgttatgcCCGGCCCTTAATCGCTTtgcgattaacgcgttaattctgacagccctaataactactcttaaaaacatttaatctctatttaagaaagccatAAACACTTTTGATTAAAAGGCCTTGTCATTTTACCATTGCGATATCTTAGAGAGACATACATTTTTAAGCTTTGACTATTTCAAACATTTCAAGTATGCTTGTTTGGTATATAAAGTCTTACATAATCTTGTAATATTGCACAGTAATGAAATTGCACAGAATTATCAGTGTTATCAaaagtattaaatattaaatattgcacagtaggTGGGTAGAAGAAAGTCCGGGGGTTGTGGGTAAGATTGTGAAGTCAGTTCATGTGAGAGTTCAAAGTGGTTATGGCTTTTgggtagcctgggaaaaccatGACGAACTTcaagcaaatttgagatttgctctgcaagtcagtctggccaagagcccattcaagtcCATTTccagtttttccaaatcgaggcaccaatcaccaCTGTTGAGGCCAGCTTTACACTatgacggcgagcagctttttgtttacgttCAACATGACGGTGCGGCTGTCGGtgctacgtcacccagatcattgttctgattggttgaaggactatccaattgcgcccagaggcatttgagcggcgtccattgttgacgcccctttggaaatgggctgtgaatgaagcttgcccagacccactctcagttacaacctagaagggtctggtgtcaaccaggctatatTTTGGGAAGAAACTGTTCTTTAACCTGTTAACCAGTCCTTGTTCTGATGCAGCTGTAGCACCTCCCAGAGGGCAGCAGGTCAAACAGATCAAAGCCAATGAGCTGTCCTTGGTGATGATTTCTGCTCTACTGAAGCAGCGGGAGGTGTAGATGTCCATCAGGGACATCTACTTTTAATTTTTACTTTGGTTGCAGTATAGAGTATAGAGGAATGCAGTATAGAGGTGGATGAATAATGTCTTTGTcatcatgtatttttgttttgtttgttttgtcaatgtATATGTCACCATTATGTGTACCTTTTTAATATATATCCATGTCAGTCCTATGTCacctgcctagggactgcagatgtcatttttactaattctggcatatttacatcgTGGTTTTTTTATACAgcaatgttcataaatatgcatggtccctatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185920 lncRNA upstream 47174 32406664 ~ 32407023 (+) True G138068
TU185813 lncRNA upstream 170304 32282111 ~ 32283893 (+) True G137981
TU185815 lncRNA upstream 172219 32281455 ~ 32281978 (+) True G137983
TU185802 lncRNA upstream 308706 32144610 ~ 32145491 (+) True G137970
TU185788 lncRNA upstream 325838 32107861 ~ 32128359 (+) True G137956
TU185933 lncRNA downstream 10505 32483069 ~ 32488516 (+) False G138076
TU185955 lncRNA downstream 79447 32552011 ~ 32554565 (+) True G138083
TU185984 lncRNA downstream 169077 32641641 ~ 32684441 (+) False G138105
TU185986 lncRNA downstream 169077 32641641 ~ 32684441 (+) False G138105
TU185988 lncRNA downstream 169077 32641641 ~ 32699309 (+) False G138105
XM_039819801.1 mRNA upstream 2678 32430414 ~ 32451519 (+) True LOC120571113
XM_039819630.1 mRNA upstream 28099 32423212 ~ 32426098 (+) True LOC120570933
XM_039819629.1 mRNA upstream 38535 32408383 ~ 32415662 (+) True LOC120570932
XM_039819789.1 mRNA upstream 55455 32348283 ~ 32398742 (+) True LOC120571106
XM_039820130.1 mRNA upstream 177632 32244994 ~ 32276565 (+) True atf6b
XM_039819798.1 mRNA downstream 10486 32483050 ~ 32512626 (+) True LOC120571111
XM_039819797.1 mRNA downstream 43892 32516456 ~ 32529882 (+) True LOC120571110
XM_039819805.1 mRNA downstream 65713 32538277 ~ 32557399 (+) False LOC120571115
XM_039819799.1 mRNA downstream 101236 32573800 ~ 32587442 (+) True LOC120571112
XM_039819800.1 mRNA downstream 101236 32573800 ~ 32586804 (+) False LOC120571112
XR_005641241.1 other upstream 450517 31995001 ~ 32003680 (+) True LOC120571558
TU185622 other upstream 770745 31617595 ~ 31683452 (+) False LOC120570800
XR_005641193.1 other downstream 65713 32538277 ~ 32566162 (+) True LOC120571115
TU185992 other downstream 169077 32641641 ~ 32696269 (+) True G138105
TU186021 other downstream 511198 32983762 ~ 32990790 (+) True G138130
TU186022 other downstream 511198 32983762 ~ 32990790 (+) False G138130
TU186023 other downstream 511198 32983762 ~ 32990790 (+) False G138130

Expression Profile