RNA id: unassigned_transcript_628


Basic Information

Item Value
RNA id unassigned_transcript_628
length 399
RNA type V_gene_segment
GC content 0.50
exon number 2
gene id LOC120570940
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 33518765 ~ 33519270 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgactctgatctccgtcctcatctggactctcctctgctgctgcttcacagagtccagaggtcaggtcacagtgactcagcctggagcagtgagctctgctcgGGGAGACTCTGTCTCCATCAGCTGCAGGCTCAGCCGAGAAGTTTTTGTAGGGACTGCGTATTGGAACAGAGGGAAAAGGTTATTGTActggtaccaacagagagatggagaagctCCTAAACTGCTCATTTACTGGGTTAATGGACGAGCATCAGGGATTCCAGGTCGTTTTTCAGCCAGTGGATCAGGgactgacttcactctgaccatcagtggagttgaggctgaagatgcagcagtttattACTGTCAGAGTCTTCACTCTATCAACAGTCAGTGGttgttcacacagtga

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko04670 Leukocyte transendothelial migration
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186260 lncRNA upstream 100794 33408746 ~ 33417971 (+) False G138303
TU186261 lncRNA upstream 108899 33408746 ~ 33409866 (+) False G138303
TU186262 lncRNA upstream 108899 33408746 ~ 33409866 (+) False G138303
TU186263 lncRNA upstream 108899 33408746 ~ 33409866 (+) True G138303
TU186264 lncRNA upstream 108899 33408746 ~ 33409866 (+) False G138303
TU186344 lncRNA downstream 12984 33532254 ~ 33562356 (+) True G138324
TU186334 lncRNA downstream 81237 33600507 ~ 33704360 (+) False G138323
TU186330 lncRNA downstream 193146 33712416 ~ 33746312 (+) True G138323
TU186402 lncRNA downstream 341502 33860772 ~ 33863936 (+) True G138359
TU186409 lncRNA downstream 365239 33884509 ~ 33911625 (+) True G138364
XM_039821251.1 mRNA upstream 318585 33162376 ~ 33200180 (+) True LOC120572048
XM_039821256.1 mRNA upstream 323222 33191381 ~ 33195543 (+) True LOC120572051
XM_039821253.1 mRNA upstream 335297 33162376 ~ 33183468 (+) False LOC120572048
XM_039821250.1 mRNA upstream 341497 33162376 ~ 33177268 (+) False LOC120572048
XM_039821254.1 mRNA upstream 351408 33162376 ~ 33167357 (+) False LOC120572048
XM_039821239.1 mRNA downstream 292095 33811365 ~ 33819867 (+) True LOC120572040
XM_039821240.1 mRNA downstream 306560 33825830 ~ 33850928 (+) True LOC120572041
XM_039821242.1 mRNA downstream 306560 33825830 ~ 33850928 (+) False LOC120572041
XM_039821241.1 mRNA downstream 306560 33825830 ~ 33850928 (+) False LOC120572041
XM_039821243.1 mRNA downstream 309455 33828725 ~ 33850928 (+) False LOC120572041
TU186089 other upstream 323442 33162416 ~ 33195323 (+) True G138177
XR_005641346.1 other upstream 341497 33162376 ~ 33177268 (+) False LOC120572048
TU186021 other upstream 527975 32983762 ~ 32990790 (+) True G138130
TU186022 other upstream 527975 32983762 ~ 32990790 (+) False G138130
TU186023 other upstream 527975 32983762 ~ 32990790 (+) False G138130
unassigned_transcript_629 other downstream 11535 33530805 ~ 33531621 (+) True LOC120572068
unassigned_transcript_631 other downstream 15387 33534657 ~ 33535271 (+) True LOC120572063
TU186312 other downstream 19845 33539115 ~ 33544251 (+) False G138322
unassigned_transcript_632 other downstream 24198 33543468 ~ 33544242 (+) True LOC120572072
unassigned_transcript_633 other downstream 28789 33548059 ~ 33548579 (+) True LOC120572061

Expression Profile