RNA id: TU199580


Basic Information

Item Value
RNA id TU199580
length 3244
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC120572750
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30105360 ~ 30122876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagggataCAAAAGGAGGTGGAAACACTGATCTCCATGACAGCGTGGACTGCCCTGCCAGAGGTCAGGTGACCACAGGGGAAGGACTTATACTGTGTAACTCCACGCCAACGCCAACGCCAACGTCAACGTCCGAGGACAGTTGCAAAATCGTCATTGTCATGGAGACCGTGTGATTGACGGAATTAGTCAATAATTCGTCACCCAGACAAGGGATAAATGTTAATAATGGCGTCCACCTcttgaaacgtttttttttttttttagattggtCTGTAACCGCAGAGGTTTTGAACACAAACCTAATTGTGGATCAGTTACGTCACGTTAATAACGTTGTCGGACCAGCATAGGTGTTAGGTGAAAGTTAGGAAGAGATTCTACACGAAGCGTTAGATCATTACATCGTGGTTTCCTCAGCTGTTAGTTTGGGATTTTTAGTCAGATGTGGTTCGGGAAGATTCTGCATGGCGAGTGGAGAGGCATTTACTCAGATTGCATCCAGAGTGGATACAGTTTTAACAACAACCACGAGACAAAACTGGTGTCAGCTGTTTGTAAAATGTCAAGAAAAACCTGGTCCCTATATTGAACCTTGGTCCCCATTTTGAACCTAACAGAAGTTTTACAGTTCACACAAAGATCATTTAGCAATCCGCCATTACGTAACTGTGGAGAGTTGTTTAAGAAGTAGTGGCTATGAACTAAAAgctcagactgatctcataaagtggcgtatgtatgacacgccaattcatatgccattattggcgtgttatcaagacgcatgctggctttttagcgtgtttatcaactcCGTTTGGCCCCCATCGACTTACATTACCtcgcgattgcgtgtgaattgacgccgtagggagtagtatgaaaagGTGAATGTTAGGAAAcaactgagagacagacaggctgttataaagacctgagagacagacacaggctGTGTGCGTACAGATGAAGTCATGATATCATGTTGGAAAGCTAGCTGAAGCAGCTTGTTGTGACGTGTCTGTAGAGCCATTCAGTAATGTTTTCACTAAGAGTTAACAGTCTAATGAAGAGAAATTTGTTAGCGGAGGTTAAGGTGACACTGCCCGGTACTCCCATATGGAGATTTagtgtttttaatcactttGCCAGGCATcacggacacacacaaatgtgttgAATTAATTTCCATTTACATTGAAACAATGACCATGATCttttaaaggggcactccacGAATTCTACACACATAAGTAAATTTTTTTAACCCAAAGCGTGTGTTACCAACAGGTGCATTTACCAAGCAGGAAGGGGCTAATGAAATATGCTATTTAAGTGGCATTATGGGTAAGCGTGGGCTCCAGTGTTTTTGGAGGATGAACGATACTAGAAACTAAAACCTCGGCTTCTGCTCAGCTTGTATATTGACCGTTTTTGTTAAAATCTGTCTCTTGCAAGTCAGCTAACTTGGTAGTGCAATACAGATTTTTTGGAGTGCTCCTTAAACCAGCATTATTTAGATACCCGCACAGCTAATGTGGGGCTTATGTCATGTGGGAGTTACGTTACTTATCAGTTACTGACTTGTAAAGAGAGCTCACATCAACATCTGAGTCGTAATTTACACCTGGGAGAAATCTCTGAAATCCAGCTTTGCGCTTAATAATGCAGAAGTTCCCGAAAAAGCAAACAAATACTGATGCCTCGCATCAACTAAAAGCATAGTTTAAACACTAATCTAATGCATATAACACAATATTGCTATCACGCAGTGTTGTCTTAACCCTTACACAACCAATTCTGCAATTATACAGTACGTATGACCGCCATGAGTGGTCCAATGACGTTAACGCTCAGAAGTCGTAAATATGGGAATCCTTCGCTTTTTTTACCTTCTGTCCAACATTAAACATCGTCATCATCAGAGGGTGCATTATGCAGAAATGACGCTTCCTTTCTTGCGTCTGTCTGTCACCAAGAAAATaactttaaatagtttttttttagcagaagACACCTCGCTTGTCTTCGGTGATGACGGAGGTTTGGAAACGTGCCGGGGACAAACTGTCTTTTTTGGAAACGAATCGACTGATAGTGGGCGGATGATTCACGCTGACTGACAGAGGGAAGGCTGATTCATTTATAAGAAGGGACCTTTTTGATGAAGAAGTCTGTCAGGAGAGCTGAATTAGGTGGGTAGTTTATAAAACGGGAAAGACAGATTCACAGATTTGATGTGTTCATGGCAACCTGATCCTGTAAGGAAGGTTTTTAGGGTTTTCTGTGCGTCAGTCATCGGCCGAGAAAAGCTCTTGCATAAATAGGAATAAACAAAGGGCGCTTTTAGCCTGAAACAAAGCACCAAACAGAAGGAACAGAAACACGTCATCATTCCcgtctttgtctctttctctgaatTTGAGGTCAGAAACAACAATTCGTTGTAGACACCACACAATCAGTCTAAACTCTGTAATAGTCCCTTTCACTTTGTGCATCTCTCCATTCATAGAAATGTCGCTTTTTTATCATTCAGCAACCCCTTAATTTAACTTAAGTTCACGTTAAATTCAAGCTATTTTTGGGCCTTAAAATGACAGCAACCTCGATCATGTTACAGAATTGGAGAACAAGCAATTTAGGAATTATTTTTGTCCCTTTGATGAACAGATTGATGGACGTGTCGATATATTTTGTGACAGAAAGACATAAAGGTAGAGTACTATATTTTGTCAATGATAGAGAGTTACTCACATGTGTGTAGTACATGTTGGTATGTTTCCAATCACTTTAAAATTAGTAAAGAGCAATATTTTTCATCAGCAAGAGTCTGTGTGTAAATAACCCCCAAAAACTGCTTCAGAAAGCGTTGATAGCTAAGCAATTGGGTTGTCATTGTTGGGTGTATAAACTTAGTTAAATTCAGTTTACTTGACTgtcatgttttaatttaaaatatgccACACTGGTGCGGGTGATTTTAATGCACCTTTGGTCGATTAAAATCTTTCTAAAAACCTTCTGGACAAAGAAGAACcatttcaaaaagaaagaaaataaaattccTGCACACACTTTTCATCTCTGCATTTGGTCAATCGGTCGACATTTCCGTCAGAGGAAAGAAAGGTCCCTGCAACCGGAatattattttctatctttttgagagattttcACCAAACAGCAGCGTAATGATAGTGAGGGCTAGTGCAAAAGAGTCTTTTCCAACACACTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199535 lncRNA downstream 5520 30097775 ~ 30099840 (-) True G147657
TU199566 lncRNA downstream 13538 30087999 ~ 30091822 (-) True G147678
TU199567 lncRNA downstream 13538 30087999 ~ 30091822 (-) False G147678
TU199568 lncRNA downstream 13538 30087999 ~ 30091822 (-) False G147678
TU199571 lncRNA downstream 13538 30087999 ~ 30091822 (-) False G147678
TU199606 lncRNA upstream 62748 30171413 ~ 30172644 (-) True G147698
TU199670 lncRNA upstream 116560 30225225 ~ 30254751 (-) True G147710
XR_005641559.1 lncRNA upstream 125507 30234172 ~ 30235016 (-) True LOC120572986
TU199684 lncRNA upstream 187760 30296425 ~ 30356108 (-) True G147724
TU199699 lncRNA upstream 335754 30444419 ~ 30471278 (-) True G147735
XM_039821921.1 mRNA downstream 18136 30068430 ~ 30087224 (-) True LOC120572598
XM_039822475.1 mRNA downstream 69471 30030428 ~ 30035889 (-) True cdc26
XM_039822477.1 mRNA downstream 207022 29887071 ~ 29898338 (-) True LOC120572943
XM_039821917.1 mRNA downstream 244293 29849040 ~ 29861067 (-) True LOC120572595
XM_039821916.1 mRNA downstream 300459 29794709 ~ 29804901 (-) True LOC120572594
XM_039822352.1 mRNA upstream 65153 30173818 ~ 30177125 (-) False LOC120572852
XM_039822351.1 mRNA upstream 65153 30173818 ~ 30177125 (-) True LOC120572852
XM_039822347.1 mRNA upstream 108167 30216832 ~ 30224798 (-) False LOC120572850
XM_039822346.1 mRNA upstream 108167 30216832 ~ 30224798 (-) False LOC120572850
XM_039822349.1 mRNA upstream 108167 30216832 ~ 30224798 (-) False LOC120572850
TU199564 other downstream 18174 30070775 ~ 30087186 (-) False LOC120572598
TU199526 other downstream 46157 30056592 ~ 30059203 (-) True G147653
TU199498 other downstream 63775 30036418 ~ 30041585 (-) True G147634
TU199503 other downstream 86469 29925195 ~ 30018891 (-) False G147636
TU199650 other upstream 74596 30183261 ~ 30284720 (-) True G147699
XR_005641498.1 other upstream 189194 30297859 ~ 30317196 (-) False LOC120572840
XR_005641497.1 other upstream 189194 30297859 ~ 30299375 (-) False LOC120572840
XR_005641499.1 other upstream 189283 30297948 ~ 30317211 (-) False LOC120572840
TU199640 other upstream 191067 30299732 ~ 30326820 (-) False G147699

Expression Profile