RNA id: TU201356


Basic Information

Item Value
RNA id TU201356
length 2824
lncRNA type sense_over
GC content 0.42
exon number 4
gene id G148892
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33910133 ~ 34080649 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTACTGCCGCCTCGTCTACTTGGAGTTCTTCTCCAACGAGTCTGATGTGTCTGAGTCACCGCCATATTAGACCAGTAAACTACGGTTTGGTGGATGGTGATTACCCCGGCAGGgCCTGATTGTGGTAACAGTGAACCCTGGAGATGATGTCATTCTGCCATGTCAGGTTGTTGGTTCCTCCATCAGAGTTGTGGAGTGGACCAGACCTGACCTGAAGCCAGATATCGTCCTCTTATACAGACGTGGACGCTTGACTCCAGACGACCAGCATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACGGAGACGTGTCTTTAATTCTGAAGAATGTGAGCAGACACGACGCTGGAACATACAAGTGTCGAGTTAAATCTGGTGTTACTAACCAAATCAGACTCATCAGCACCATCCGTCTGCAGGTTCCAGacCTGGTTGTGTTACCAGTGCCTGGAGATGATGTCATTCTACCATGTCAGGCTAATGATTACAACATCAGTGATGTAGAGTGGAGCAGAGGAGACTTGGAGCCAGATACCGTCCTCTTGTACAGAGATGGACACCTGGATCCAGACTACCAGAATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACGGAGACGCGTCTTTAACTCTGAAGAATGTGAGGAGCATCGACAAGGGGACATACGAGTGTCGAGTTAAACCAGCTGATTCAAGACGGGAAAGAAGAGCCATCATCAACTctgagccaatcagaatcatccGTCTGCAGGTTACAGGTCCTGAGGATAGAAACTCCTCTCCTGTAGGCCGATACCGTGGACTGGCAGCAGGTGTTCTGGTTCTTGTAGCTGTTGTTGCAGTGGTTGGTGTCCTGATGTATAAAAGACATAAGAACAAGAGATCAGGACAACCTGCTGATGAAGCCTCAGCCGATAAGTTCATCTGACATCTCCCAGAGCTCTTTACACCTGACAGCTTTCTCATGTGCTGTATATACAACATGATTTTTACTTCTGTGGGTGGGAGGTCATGTGCAGATCTGCTGTTTGGTCCGTTTGCCCCCCCATCATGGTGGAGGGGTCTGTGTATCTGAGTCTGTATCATCTGGAGCTCTGAGCTCCTCTAGGGTCTCCTATggtgtagggctgcacgatactTTCTTTCATCGTCTACATCGATGTTGACGCCAACACTTTTTTGCTGCTTGCtagaaaagtaaactttcaccgTTCTCCTTTTACATGATCGTTACCGGCCGAGCCTTCCCCTCTAAGACAGGTGGTCATGTGACGTAACGGGAGGTGAGGCTCTCCGTGGGTAGAAAACTACCGTAAGCGGTAGCTGCCACAGACACagtgatgctaatacttttccATGGGGAGCCAGTGTTTTATGTTCGCTGCAAAGACAAACTAAATCACCTGATTAAGGCAACGTTATCCTGACTTCTCCCGGCCATTTTTCACCGCAGAAAGCTGctaccagccaggctaaagctaacatAGTTAGCCTAAAGAAACTTgtcccaactaatgttacagtTCGGAGCCGCGAAGATAAAAACGTAACGCCAATCTCCAACAGCAGTCTGTTTCTGATATAACATAATTTACACTGATTGAAGTGCTCCTGGATACACAGTTTGGTGCTGTATGAGTGACTTACAGGCTCCAACCAACCACCAATCATGATCAATTTTAATCAATTTATCTAACAACCAAGGCTAGGCCAAGGTAGTCGACCACAACCTGAAATCTAGAGGAAGcaacatgcatgcattattaCTATCATTGACTTTAGCCTGGATTGATATTATTATATGAATACAATGCTGTCATGTCAGTCAACCAGTGTATTTCTTCCTAATCTCCCTCTCCAAAATCACTTCAGAAGAGTAATCACAGCGTTGCTTTGGTGTTTGTAAAGCATTAAAGTTCATCAAAGACTGGTTCACATAAGAAAATTTCCATTTTAATTTTTGTAAATGCACTCCCCTACAAAATCACCCCAGTAGTTGAGAATTATTTAGTATTTCTAAATAGGGCTATTTATGTCCTCTTGTATAAATTATATTGCATATATATATCGCAGGAAAAAAAACgcaatgtaatgtttgtttttttaccgtGGTATCGAAATCGGCATCGAGAATCGTGTTATTTTACTGGTATTGGCACCGACTACTGAATTTTTGGTATTGTGACACCCCTAAAGTGAATCTAACAATAACATACTCAACGCTGAGCTGTATCCCAGCCAGCTTTTAACAGGAAATAATGTTTCTTTAGTTGTAAATATCAGCAGACGGAGCACCCACCAGATATCTTCTAATCAGGTGTAGAGAGATCTTCAACATGTCTTCTGTTTGGGTGTTTtggtaataatacattttatatgaaGGGAATTTTAAATGATTGTTTTCTGCTCGGCCATATAAAGCCTCAGGGTGCCTTCTAAGAATGTTATATTTCCAGCTAATGATAAAATATCAACTGacattgaatattttaaactgagGAGTTGATGACATTGTGaatattgttgttattgtaattataaaatCATCTGATGCAGCTCAGAATATCTCGGGGGGACATAGAGGACGAGTCTGTCTCTAAATAAGACCTTAAACTGGATTTATTGTCTATGAAGTAGAATTACATGATGTTGAACTATACAAAAGTGATGATCTGTGAAAGCAGTTGATAATTATTTAATATGAATCAAtggataaaataataataatcagagaTATGATGGAAGTTGATAACTCAGTTTTAATATTCAGATACATTAATGCGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201391 lncRNA downstream 4475 33948391 ~ 33948898 (-) True G148915
TU201389 lncRNA downstream 24289 33927611 ~ 33929084 (-) True G148913
TU201382 lncRNA downstream 37146 33915598 ~ 33916227 (-) True G148909
XR_005641521.1 lncRNA downstream 131189 33807794 ~ 33822184 (-) True LOC120572957
TU201349 lncRNA downstream 131212 33809574 ~ 33822161 (-) False LOC120572957
TU201352 lncRNA upstream 9097 33997864 ~ 34007433 (-) False G148892
TU201362 lncRNA upstream 25992 34014759 ~ 34080649 (-) False G148892
TU201355 lncRNA upstream 26748 34015515 ~ 34054107 (-) False G148892
TU201359 lncRNA upstream 26748 34015515 ~ 34080649 (-) False G148892
TU201365 lncRNA upstream 93695 34082462 ~ 34175847 (-) True LOC120572812
XM_039822268.1 mRNA downstream 5462 33937090 ~ 33947911 (-) True LOC120572813
XM_039822167.1 mRNA downstream 256126 33670442 ~ 33697247 (-) True LOC120572751
XM_039822168.1 mRNA downstream 256126 33670667 ~ 33697247 (-) False LOC120572751
XM_039822453.1 mRNA downstream 311331 33637494 ~ 33642042 (-) False LOC120572928
XM_039822314.1 mRNA upstream 8286 33997053 ~ 34006889 (-) True LOC120572834
XM_039821944.1 mRNA upstream 19999 34008766 ~ 34028312 (-) True LOC120572621
XM_039822293.1 mRNA upstream 57470 34046237 ~ 34193592 (-) False LOC120572826
XM_039822295.1 mRNA upstream 57470 34046237 ~ 34075514 (-) False LOC120572826
XM_039822294.1 mRNA upstream 57470 34046237 ~ 34052914 (-) True LOC120572826
TU201330 other downstream 163998 33724665 ~ 33789375 (-) False G148879
TU201327 other downstream 163998 33788595 ~ 33789375 (-) False G148879
TU201333 other downstream 163998 33788595 ~ 33789375 (-) True G148879
TU201334 other downstream 163998 33788595 ~ 33789375 (-) False G148879
TU200929 other downstream 455357 33496634 ~ 33498016 (-) False LOC120572843
TU201394 other upstream 31805 34020572 ~ 34021079 (-) True G148918
XR_005641496.1 other upstream 176360 34165127 ~ 34176045 (-) False LOC120572812
XR_005641508.1 other upstream 363265 34352032 ~ 34353438 (-) False LOC120572901
TU201452 other upstream 424513 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other upstream 424513 34413280 ~ 34419912 (-) True LOC120572624

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU237839 True 3898 TUCP 0.40 1 CI01000049 6878133 ~ 6882030 (+)