RNA id: XR_005641521.1


Basic Information

Item Value
RNA id XR_005641521.1
length 2183
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120572957
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33807709 ~ 33822184 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCCATTAATAAAGGGAACAAGGCAAACCTAACGGCAGCTAGATGCTTCCTCTTTTCTGTGTAAACCAGATAACGGAGGATCTCCGCTCTCTCAGCTGTTATGACTCCGTTTCTGTTCCTGTTATTTCTCTGGAGCAGCTTCAGACCTGACTGAGGTAACCGTGAACCCTGGAGATGATGTCATTCTGCCATGTAAGGCTGCTGATTCCTCCATCACCACTCTAGGTTGGACCAGACCTGACCTGGAGCCAGATATCGTCCTCTATTACAGCGATGAACACCTGGATACAACCTACCAGCATCCGTcatttaaccctcgtgttgtcctgGGGTCATTCTGACCCCAAATGAAATCTTTTGCCcgtcaaaatgtattttattcatCAATTGGTCTGAAAATAATGGTGAGTGTTTAACACTATGCTCTTAATGCCCAAACTAAGTTTGAAGTAATTTGATTGAATGATGGGTTTTTTACTGAATGTAATATCTTCTGTTGTCCTCTGGGGTCAAAGGGACCCCGCAGCACAAAGTGGTGAAATGGAGCAAATAGTCCGAACATCCTGGCTTACCAAAACCTCTCTGATCATGGATGGTTGATGGGTGGGCTCAAGCAATGGTTAGGACAACAACAAGAACAACCAAACAGGTCTTTTCTCCCGGCAGTTGGGGCGTTTCACAGTTTAGtctgagagagagtgaggaggAAGAAGCTCTATACTGCACAGGACGCTTGCcagatattttttaatataaaatctgAGATAGAAGAATATTTCCAGTAAAAGGAGGAAACATTGGCGCCGGGAGAGCTCAGTTGGtcgagcgggcgcccatatatagaggtttactgcTCGATACAGCAGGCCCAGGTTtgactccctcctctctctccactttcatttcttcagctgtcctgtcaataaaggcctaaaaatgctcaaaatatcttaaaaaacaagaaaaaaggatgaAACATTGATCTGGTCTTCCCTCCCTCCCAGTGACGGAGGAAGCATGTTGaccgcagagagagagacaggccaCCGTATATGCAAGGTCTCAAATTCATAACATAAATTCCACTTTTGAGCTGTCTTATTGGCCTTATATTTCTAAtggaataaagaaaatggtGTTAATGTGTTTGAATGAAGTGGTTATTAAAGGTGTAATACAGAATTAGTTGAATTATCCActaaatattaattaattaacagtAAAACCAGATGGGGTCAGTTTGACCCCAGAGGACAACAGGTGTGATTATGGGCTGccattaaaacaattaaaatgatttaagaacTGCATCCTTACTAAACTCTGACATATACCACTCTGTGATGAGTCCAATAGtcaaaataatattaaattaaaaataatttttactcAGAAACAGGGTGTACTTTTATATAAACAAGGTCTATTGGCTCTAAATTCCAAAACGAAGGGAAACGTGTAGTAATGGGTTGAACTGAAGTAAGACTAAAGGTGTAACACAGAATAGAttgataatttatactttatactttaaaTAACAGTCAAACCAGGGGGGGTCATCTTGACCCCAGAGGACAACAGGTGTAAGACATCCAGGAGGACATTAGGAGGGTTAAGGACAGGGTGGACCTGGTGGACAGACAGCTGAAGGACGGAGACGTGTCTCTAACTCTGAAGAATGTGAGCAGACACGACAACGGGACATACAAGTGTCGAGTTGCACCAGCTGGTTCCTACATCAACGACTctaagccaatcagaatcgtccgTCTGCAGGTTCCAGACCCAGCAGGTTCAAACCGAGGACACTCCGAGGATGGAAACTCCTCTCCTGTAGGTCGATACCGGGGACTGGCAGCAGGTGTTCTGGTTCTTGTAGCTGTTGCAGTGGTTGGTGTCCTGATATATAAAAGACACAAGAACAACAGATCAAGacaacctgctgctgctgatgatgaaGCATCGGGTGATAAGTTGATTGCTCTGACGTCCTCTGGGGTCTCCCATGACGAGATggtcccagagagagagatttgatTTGAATGAACTTTACCTTTAGAGAAATAgaatatttactcaagtaaaagtactgttgcttggggcgacctctaggtCCCccagtagagcgtgcgccccatgtgggCTGAGTCCTcggcagcggcccgggttcgagtccaacctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201342 lncRNA downstream 3506 33749239 ~ 33804288 (-) True G148884
TU201337 lncRNA downstream 18419 33724665 ~ 33789375 (-) False G148879
TU201328 lncRNA downstream 18419 33788595 ~ 33789375 (-) False G148879
TU201329 lncRNA downstream 18419 33788595 ~ 33789375 (-) False G148879
TU201344 lncRNA downstream 28377 33778647 ~ 33779417 (-) True G148886
TU201361 lncRNA upstream 87949 33910133 ~ 33988767 (-) False G148892
TU201382 lncRNA upstream 93414 33915598 ~ 33916227 (-) True G148909
TU201389 lncRNA upstream 105427 33927611 ~ 33929084 (-) True G148913
TU201391 lncRNA upstream 126207 33948391 ~ 33948898 (-) True G148915
TU201354 lncRNA upstream 131189 33953373 ~ 33961750 (-) True G148892
XM_039822167.1 mRNA downstream 110547 33670442 ~ 33697247 (-) True LOC120572751
XM_039822168.1 mRNA downstream 110547 33670667 ~ 33697247 (-) False LOC120572751
XM_039822453.1 mRNA downstream 165752 33637494 ~ 33642042 (-) False LOC120572928
XM_039822454.1 mRNA downstream 167789 33637494 ~ 33640005 (-) True LOC120572928
XM_039821941.1 mRNA downstream 182657 33622683 ~ 33625137 (-) True LOC120572619
XM_039822268.1 mRNA upstream 114906 33937090 ~ 33947911 (-) True LOC120572813
XM_039822218.1 mRNA upstream 131068 33953252 ~ 33988038 (-) True LOC120572783
XM_039822219.1 mRNA upstream 158211 33980395 ~ 33988039 (-) False LOC120572783
XM_039822220.1 mRNA upstream 158211 33980395 ~ 33987646 (-) False LOC120572783
XM_039822314.1 mRNA upstream 174869 33997053 ~ 34006889 (-) True LOC120572834
TU201330 other downstream 18419 33724665 ~ 33789375 (-) False G148879
TU201327 other downstream 18419 33788595 ~ 33789375 (-) False G148879
TU201333 other downstream 18419 33788595 ~ 33789375 (-) True G148879
TU201334 other downstream 18419 33788595 ~ 33789375 (-) False G148879
TU200929 other downstream 309778 33496634 ~ 33498016 (-) False LOC120572843
TU201394 other upstream 198388 34020572 ~ 34021079 (-) True G148918
XR_005641496.1 other upstream 342943 34165127 ~ 34176045 (-) False LOC120572812
XR_005641508.1 other upstream 529848 34352032 ~ 34353438 (-) False LOC120572901
TU201452 other upstream 591096 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other upstream 591096 34413280 ~ 34419912 (-) True LOC120572624

Expression Profile