RNA id: XM_039821941.1


Basic Information

Item Value
RNA id XM_039821941.1
length 1435
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120572619
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33622683 ~ 33625137 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttcagacaACATGTCCAATATGTCAGGAGTGGATTTCCTCTGACATTGTGGAAATCCACGCAAGCATATGTGGTGAAAGAGTTTGTAATGAAACTGAGGAGAGCCAGGCACATCCGACTGAAAgCATTTCTGATGTCATCAGAGTACTCCATGAAAGGGTGGACAACACAGCTATATTCAGCATCTGTGTGACGAGGGAGGACATGCTTGAAAGGGGGATGAAGCAGTGGCAGCGCTAGAAAAAAGCATCCCCCAAAAACCCTCTTAGGGTAACATTCCTCGGAGAGACCGGGATTGACAACGGGGCTCTGAGGAAGGAGTTTTTAACTGaaatggtGACAGGTATACAGAGCAGATTCTTCCTGGGAGGGGACAATGGCAAAACCCCCAAGTATTCAATGACCGACATGGACAAACACCACTTCAaGACTGTCGGAGAGATATTGGCAGTGAGCATTGCTCAAGGTGGACCACCCCCGAATTTCTTCATGGATTGGTGTTACAACTACATGTCCACTGGAGAACTGGACCAGGAAGCGATCACTGAGATGGCTGTTACAGACCCAGAACTCATTGATTTAATACAAGAGATTCGGGCAGCTGACAACACATCCCTGATGGAGTGCACAGACAGGATTTTGTCATGTGGATATACAGGGCCAGTATCCATTGAAAAAAGGGAAGATATTTTGCGatcTATTGTCCTATACTCAACAGTGAGGTTACTTCCTATGCTCCAGCAAATCTGCTCAGGTATGAAGCTGTATGGCCTCCTCAGCTTGGTGCAGAAAGAAAAGGACATCTGCAGACAGCTCTTTGTACTTGGATCGTTTAGCAAGGTGGATGCTGATTTCTTGGTGAAGTCACTATCACCTGTCTTCAGTGAGAAGGGTACAATGAGGCGTCAGAGAGAGTGCAGAGTAGTCAATTTTCTGCAGGACTTCATACAGGACATGGAGGACGAAGAAGACGGAATCAACACGGTCTTACCTGAAAGCGTTGCCGAGGATGAAGGTGACAAGGAAGTGCTAATTAATGTGGGCAAGTTCTGTCAGTGGCTGACAGGGCAAGCACACATACCCCTCAGTCACGCAGACCGGGAGGGTTTCAGTATTACAATAGAATTTGATCATGATTGTCAGGTGCGTTATGGGACACATAGCATCTGTTACCCAATTGTGAATGCCTGCTCGTGCTCCGTAACATTTCCTGTAGCCCATCTCACCACACAGGAGGAGTTCAGAAGGGTTATTGCTCAAGCTATAACATATGGCTATGACTTTGGCCGCAGCTGAATAACTGTTGAATGATACTGAAGTCCAGATTGAAGACATGTTTTAGTAGTAATAATTGAAATTTGTCTGATTGTCAAATTGAACATTTTGTATTGGCATTGTCTTTCCAGTCAGAGCTTTTGACTGGGTGCCAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641592.1 lncRNA downstream 72731 33534673 ~ 33549952 (-) True LOC120573018
TU200933 lncRNA downstream 108060 33514388 ~ 33514623 (-) True G148608
TU200930 lncRNA downstream 124667 33497385 ~ 33498016 (-) False LOC120572843
TU200910 lncRNA downstream 156411 33465552 ~ 33466272 (-) True G148591
TU200904 lncRNA downstream 217938 33404365 ~ 33404745 (-) True G148585
XR_005641550.1 lncRNA upstream 738 33625875 ~ 33626366 (-) True LOC120572977
XR_005641585.1 lncRNA upstream 1370 33626507 ~ 33627132 (-) True LOC120573011
XR_005641595.1 lncRNA upstream 94340 33719477 ~ 33720401 (-) True LOC120573021
TU201337 lncRNA upstream 99528 33724665 ~ 33789375 (-) False G148879
TU201342 lncRNA upstream 124102 33749239 ~ 33804288 (-) True G148884
XM_039821938.1 mRNA downstream 94747 33525259 ~ 33527936 (-) True LOC120572617
XM_039822368.1 mRNA downstream 97904 33523111 ~ 33524779 (-) False LOC120572860
XM_039822367.1 mRNA downstream 97904 33523111 ~ 33524779 (-) True LOC120572860
XM_039822290.1 mRNA downstream 112837 33506838 ~ 33509846 (-) True LOC120572824
XM_039822342.1 mRNA downstream 120123 33500000 ~ 33502560 (-) True LOC120572848
XM_039822453.1 mRNA upstream 12357 33637494 ~ 33642042 (-) False LOC120572928
XM_039822454.1 mRNA upstream 12357 33637494 ~ 33640005 (-) True LOC120572928
XM_039822167.1 mRNA upstream 45305 33670442 ~ 33697247 (-) True LOC120572751
XM_039822168.1 mRNA upstream 45530 33670667 ~ 33697247 (-) False LOC120572751
XM_039822268.1 mRNA upstream 311953 33937090 ~ 33947911 (-) True LOC120572813
TU200929 other downstream 124667 33496634 ~ 33498016 (-) False LOC120572843
TU200861 other downstream 338809 33273131 ~ 33283874 (-) False corin
TU201330 other upstream 99528 33724665 ~ 33789375 (-) False G148879
TU201327 other upstream 163458 33788595 ~ 33789375 (-) False G148879
TU201333 other upstream 163458 33788595 ~ 33789375 (-) True G148879
TU201334 other upstream 163458 33788595 ~ 33789375 (-) False G148879
TU201394 other upstream 395435 34020572 ~ 34021079 (-) True G148918

Expression Profile