RNA id: XR_005641595.1


Basic Information

Item Value
RNA id XR_005641595.1
length 385
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id LOC120573021
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33719477 ~ 33720401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCTTGAGCGGTGGTAGATGTCTGCTGTCGTGTgggtctttctctccctccctctcgctGTGCAGGTTTGACTTTGAAAACAGGGAATGCTCATCAGCTGGCCGAAGTCTACCGGTGGTGATTGATGTGATTCCACCACCAGCTGATTGGGGCCGCGTCTGTTTTGTCTCCACTGCTAAATGCTGCTAATTGTACAGCTTTCTCTGCTGCTAACTACACAGTCTACTCTCTGCTGCTGAATGTATAGCTTTGCCTACAGAGCCTTATCTGCTGCTGTGCCTCGGCTGCTAACTGCAGCTTTGGTTTTTGCCGCGAACTACACAGCGTGTCGCTACTGCTTGGCACTGTTGTTGCTGGCTTTTGGTGCGCATGGTGAATTGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201310 lncRNA downstream 45408 33579951 ~ 33674069 (-) True G148866
TU201307 lncRNA downstream 56259 33576915 ~ 33663218 (-) True G148864
XR_005641585.1 lncRNA downstream 92345 33626507 ~ 33627132 (-) True LOC120573011
XR_005641550.1 lncRNA downstream 93111 33625875 ~ 33626366 (-) True LOC120572977
XR_005641592.1 lncRNA downstream 169525 33534673 ~ 33549952 (-) True LOC120573018
TU201337 lncRNA upstream 4264 33724665 ~ 33789375 (-) False G148879
TU201342 lncRNA upstream 28838 33749239 ~ 33804288 (-) True G148884
TU201344 lncRNA upstream 58246 33778647 ~ 33779417 (-) True G148886
TU201328 lncRNA upstream 68194 33788595 ~ 33789375 (-) False G148879
TU201329 lncRNA upstream 68194 33788595 ~ 33789375 (-) False G148879
XM_039822167.1 mRNA downstream 22230 33670442 ~ 33697247 (-) True LOC120572751
XM_039822168.1 mRNA downstream 22230 33670667 ~ 33697247 (-) False LOC120572751
XM_039822453.1 mRNA downstream 77435 33637494 ~ 33642042 (-) False LOC120572928
XM_039822454.1 mRNA downstream 79472 33637494 ~ 33640005 (-) True LOC120572928
XM_039821941.1 mRNA downstream 94340 33622683 ~ 33625137 (-) True LOC120572619
XM_039822268.1 mRNA upstream 216689 33937090 ~ 33947911 (-) True LOC120572813
XM_039822218.1 mRNA upstream 232851 33953252 ~ 33988038 (-) True LOC120572783
XM_039822219.1 mRNA upstream 259994 33980395 ~ 33988039 (-) False LOC120572783
XM_039822220.1 mRNA upstream 259994 33980395 ~ 33987646 (-) False LOC120572783
XM_039822314.1 mRNA upstream 276652 33997053 ~ 34006889 (-) True LOC120572834
TU200929 other downstream 221461 33496634 ~ 33498016 (-) False LOC120572843
TU200861 other downstream 435603 33273131 ~ 33283874 (-) False corin
TU201330 other upstream 4264 33724665 ~ 33789375 (-) False G148879
TU201327 other upstream 68194 33788595 ~ 33789375 (-) False G148879
TU201333 other upstream 68194 33788595 ~ 33789375 (-) True G148879
TU201334 other upstream 68194 33788595 ~ 33789375 (-) False G148879
TU201394 other upstream 300171 34020572 ~ 34021079 (-) True G148918

Expression Profile