RNA id: XM_039822268.1


Basic Information

Item Value
RNA id XM_039822268.1
length 1175
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120572813
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33937090 ~ 33947911 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTCATGGCTCCATTAATGCTCCTGGTGTTACTTCTGTCTGCAGCAGCTTCTGacCTGATTGATGTAACAGTGCACCCTGGAGATAATGCAACTCTGCCATGTCAGGCTGATAATTCCTCCATCAGAGTTGCAGAGTGGACCAGACCTGACCTGAAGCCAGATATCGTCCTCTATTACAGCGATGAACACCTGGATCCAACCGACCAGCATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACGGGAATGTGTCTTTAACTCTGAAGAATGTGAGCAGACACGATGCTGGAACATACGAGTGTCGAGTTGTATCAGGTGGTTCACCTGATGGTTCCTACATCAGAGACTCTGAGCCAATCAGAACCATCCGTCTGCAGGTTATAGAGCCAGCAGGTCCTGAGGATAGAAACTCCTCTCCTGGAGGCCTCCTCGTTGGACTGGCAGCAGGAGTTACAGacCTAAATGTAACAGTGCACCCTGGAGATGATGTCACTCTGCCATGTCAGGCTGCTGATTCCTCCATCAGAGCTGAACAGTGGACCAGAGCTGACCTGAAGCCAGATATTGTCCTCTTAAACAGAGATGGACACTTGAATACAACCCACCAGCATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACGGGAACATGTCTTTAACTCTGAAGAATGTGAGCAGACACGACGCTGGAGAATACAAGTGTCGAGTTAAAACCGATGACTCTGACCAAATCAGAACCATCAGAATCATCAGTCTGCAGGTTAGAGACCCAGCAGATTCTGGTGATGGACCCTCCTCTCCTGTAGGCCTCATCGTTGGACTGGCAGGTGTTCTGCTTCTTGTAGCTGTTGCAGTGGGTTGTGTCCtgatatataaaatacataagGACAAGAGATCAGGACCATCTGCTCATTATGCTGCTGGAACATCGACCGTTCAGTTCGTCTGACAACTCCCAGAGCTCTTTACCCCTGACTGCTTTGTCATGTGCTGTATAcattagggatgcactgaatccagatttttggggttcggccgaatacagaatccactggttaagattctgcctaATCGGAaaccgaatcctcctcccagcctcagtccattaacacagtaaacgcACTAAGAAGTAAACGacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201389 lncRNA downstream 8006 33927611 ~ 33929084 (-) True G148913
TU201382 lncRNA downstream 20863 33915598 ~ 33916227 (-) True G148909
XR_005641521.1 lncRNA downstream 114906 33807794 ~ 33822184 (-) True LOC120572957
TU201349 lncRNA downstream 114929 33809574 ~ 33822161 (-) False LOC120572957
TU201363 lncRNA downstream 128449 33807709 ~ 33808641 (-) False LOC120572957
TU201391 lncRNA upstream 480 33948391 ~ 33948898 (-) True G148915
TU201354 lncRNA upstream 5462 33953373 ~ 33961750 (-) True G148892
TU201356 lncRNA upstream 5462 33953373 ~ 33988767 (-) False G148892
TU201353 lncRNA upstream 32108 33980019 ~ 33988767 (-) False G148892
TU201393 lncRNA upstream 38484 33986395 ~ 34004225 (-) True G148917
XM_039822167.1 mRNA downstream 239843 33670442 ~ 33697247 (-) True LOC120572751
XM_039822168.1 mRNA downstream 239843 33670667 ~ 33697247 (-) False LOC120572751
XM_039822453.1 mRNA downstream 295048 33637494 ~ 33642042 (-) False LOC120572928
XM_039822454.1 mRNA downstream 297085 33637494 ~ 33640005 (-) True LOC120572928
XM_039821941.1 mRNA downstream 311953 33622683 ~ 33625137 (-) True LOC120572619
XM_039822218.1 mRNA upstream 5341 33953252 ~ 33988038 (-) True LOC120572783
XM_039822219.1 mRNA upstream 32484 33980395 ~ 33988039 (-) False LOC120572783
XM_039822220.1 mRNA upstream 32484 33980395 ~ 33987646 (-) False LOC120572783
XM_039822314.1 mRNA upstream 49142 33997053 ~ 34006889 (-) True LOC120572834
XM_039821944.1 mRNA upstream 60855 34008766 ~ 34028312 (-) True LOC120572621
TU201330 other downstream 147715 33724665 ~ 33789375 (-) False G148879
TU201327 other downstream 147715 33788595 ~ 33789375 (-) False G148879
TU201333 other downstream 147715 33788595 ~ 33789375 (-) True G148879
TU201334 other downstream 147715 33788595 ~ 33789375 (-) False G148879
TU200929 other downstream 439074 33496634 ~ 33498016 (-) False LOC120572843
TU201394 other upstream 72661 34020572 ~ 34021079 (-) True G148918
XR_005641496.1 other upstream 217216 34165127 ~ 34176045 (-) False LOC120572812
XR_005641508.1 other upstream 404121 34352032 ~ 34353438 (-) False LOC120572901
TU201452 other upstream 465369 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other upstream 465369 34413280 ~ 34419912 (-) True LOC120572624

Expression Profile