RNA id: XR_005641707.1


Basic Information

Item Value
RNA id XR_005641707.1
length 1430
RNA type transcript
GC content 0.46
exon number 8
gene id LOC120573395
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38155598 ~ 38179480 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTCAGTGAGACTGAGTCAGTGTTTGTtaagagaacagaggaacatgGCTTCATCCTTTCTCAGGGTCTCCCTGCTCTTCATCAGCCTCTACACAGCAGatGGATTTATGGAATATTTTCTGATCCGTTGTGACTTTAACTCGTCTGATCTGAACGACATTGAGTTCATCTACTCTGTTCATTACAACAAGATGGAGTACGCCAggttcagcagcagtttgggGAAGTTTGTTGGATACAATGAAATTGGTTTGAAACAGGCTGCGGTCTGGAACAAAGACACTTCAATACTGACTGGAATGAGAGCTCAGAAGGAGGCGTACTGCAAACCACACATTGATGCTTACTACCAGGCTGTTCTGCCTAAATCAGCTGAGCCGTATGTCCGACTGAGCTCTACGGAGCCCTCTGGTGGTAAACATTCGGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAAACACATCAGAGTCAAGTGGACCAGAGACGGACAGGAAGTCACCTCTGATGTCACTTCCACTGATGAGCTGGCAGACGGTGATTGGTACTACCAGATCCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTATGGTGGAACACGCCAGCCTGAGAGAACCTCTGATTACTCACTGGGACCCGTCCATGCCTGAGTCTGAGAGGAAAAAGATTGCCATCGGAGCCTCAGGACTGATCCTGGGTCTGGTCTTATCTCTGGCTGGATTCATCTACTACAAGAGGAATGCCCAAGGTCAGAACAGGGTTCTCTGTAGACTAGTTCAGACCTCTTTACAGAACATTAGACCATCTACTACAAGAGGAAGACCCGAGGTCAGAACAGGGCTCTCTGTAGACTAGTTCAGACCTCTTTACAGAACATTAGACCATCTACTACAAGAGGAATGCCCAAGGAAGGATTCTGGTTCCCAGTAGCTGATTCTGAACCTGGTTCTGGTCCTGTAGCTGTTTGTCAGATGGATTAAAAAGCAGCAGCTGCTTCAACCTGCTTCGTGTGTTTACAGCTCAGCAGACTGTCGGTGCTGCTGGACCAACTCAACTCCTGATTCTCTGATGATCTGGTACTGATCTTTGATACTCAGCTGGTCTGAACCTGATCCAGGACTGTGGTGTTAACTCTGACGGTCCTGGACCAGGTTTAGTCTGGACTCTGGTATATCCCAGCTGGATCTGAACTCTGCTTCATCTACATGTGATATGATTCTTTCTGTGTGAAATCAATATTTTTCAGCCACTTATATCCACCAACGTAATAACTCTGGTCTTTAAATCAGATATAATCAGTTATTTGAATGATTTGGGGGCTGGCAGGTTGTGTGATTGTtagatttatatatttttactggAGTGAAACATTTTCTAACCCTAATAAACTGATCAGAAAACTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641711.1 lncRNA downstream 26202 38137603 ~ 38143291 (-) False LOC120573409
XR_005641709.1 lncRNA downstream 26202 38137603 ~ 38143291 (-) False LOC120573409
XR_005641710.1 lncRNA downstream 26202 38137603 ~ 38143291 (-) False LOC120573409
XR_005641713.1 lncRNA downstream 26202 38137603 ~ 38143291 (-) False LOC120573409
XR_005641708.1 lncRNA downstream 26202 38137603 ~ 38143291 (-) False LOC120573409
TU202977 lncRNA upstream 143091 38322571 ~ 38323111 (-) True G150021
TU202978 lncRNA upstream 143091 38322571 ~ 38323111 (-) False G150021
TU202986 lncRNA upstream 168085 38347565 ~ 38347971 (-) True G150029
TU202987 lncRNA upstream 168085 38347565 ~ 38347971 (-) False G150029
TU202988 lncRNA upstream 168085 38347565 ~ 38347971 (-) False G150029
XM_039823112.1 mRNA downstream 137391 38027935 ~ 38032102 (-) True LOC120573396
XM_039823116.1 mRNA downstream 158918 38007345 ~ 38010575 (-) True LOC120573400
XM_039823130.1 mRNA downstream 169402 37993777 ~ 38000091 (-) True LOC120573408
XM_039823115.1 mRNA downstream 177697 37975304 ~ 37991796 (-) True LOC120573399
XM_039821970.1 mRNA downstream 205745 37960642 ~ 37963748 (-) True LOC120572652
XM_039823129.1 mRNA upstream 20329 38199809 ~ 38202344 (-) True LOC120573407
XM_039823121.1 mRNA upstream 106412 38285892 ~ 38338759 (-) False LOC120573402
XM_039823119.1 mRNA upstream 106412 38285892 ~ 38294191 (-) True LOC120573402
XM_039823120.1 mRNA upstream 106412 38285892 ~ 38293940 (-) False LOC120573402
XM_039823104.1 mRNA upstream 296283 38475763 ~ 38487369 (-) True LOC120573391
TU202950 other downstream 205772 37961518 ~ 37963721 (-) False LOC120572652
TU202911 other downstream 280857 37844163 ~ 37888636 (-) False G149973
TU202908 other downstream 280857 37844230 ~ 37888636 (-) False G149973
TU202913 other downstream 280857 37887485 ~ 37888636 (-) False G149973
TU202630 other downstream 562437 37590595 ~ 37607056 (-) True G149821
TU202965 other upstream 67160 38246640 ~ 38278247 (-) True G150012
TU203204 other upstream 308488 38487968 ~ 38541170 (-) False LOC120572653
TU203205 other upstream 308488 38487968 ~ 38505641 (-) False LOC120572653
TU203212 other upstream 349437 38528917 ~ 38533300 (-) True G150174
TU203219 other upstream 381789 38561269 ~ 38633052 (-) False LOC120572655

Expression Profile