RNA id: XR_005641828.1


Basic Information

Item Value
RNA id XR_005641828.1
length 828
RNA type transcript
GC content 0.56
exon number 2
gene id LOC120574137
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 619267 ~ 658724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgcgtgtgtgtgtgtgattgtgtgtgtgtgtgtgttgtcattgtgaaagtgtgtgtgtatgtgtgctccAGCTCTCTCAGCGTTAGCATCtccctccagctctctcagGTCTTGGTTCCAGCAGGCCCAGGTACCGTTGGTTCCAGCAGGTCCAGGTACCATTGGTTCCAGCAGGCCCAGGTACCGTTGGTTCCAGCAGGCCCAGGTACCATTGGTTCCAGCAGGTCCAGGTACCATTGGTTCCAGCAGGCCCAGGTACCGTTGGTTCCAGCAGGTCCAGGTACCATTGGTTCCAGCAGGTCTTGGTTCCAGCAGGTCCAGGTACCATTGGTTCCAGCAGGTCTTGGTTCCAGCAGGCCCAGGTACCGTTGGTTCCAGCAGGTCCAGGTACCATTGGTTCCAGCAGGTCTTGGTTCCAGCAGGTCCAGGTACCATTGGTTCCTGCAGGTCTTGGTTCCAGCAGGCCCAGGTACCGTTGGTTCCAGCAGGCCCAGGTACCGTTGGTTCCAGCAGGCCCAGGTACCATTGGTTCCAGCAGGTCTTGGTTCCAGCAGGTCCAGGTACCGTTGGTTCCAGCAGGCCCAGGTACCATTGGTTCCAGCAGGTCTTGGTTCCAGCAGGTCCAGGTACCGTTGGTTCCAGCAGGTCCAGGTACCGTTGCTCGTCTCAGAGGGAgggttttaacccaaaccacaattcTTTCTTTCTAATCTGAACTACTGGCGTGGTGTTATCTACGTCTTtcccaccagaaaggtgtctgctgctgctgctactgctgctgctgctgctgctgctgctgctactactactactactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203404 lncRNA upstream 552 518578 ~ 655055 (+) True G150310
TU203413 lncRNA upstream 3538 651115 ~ 652069 (+) True G150319
TU203414 lncRNA upstream 4035 615775 ~ 651572 (+) True G150320
TU203415 lncRNA upstream 39908 615328 ~ 615699 (+) True G150321
TU203500 lncRNA upstream 150465 500054 ~ 505142 (+) True G150371
TU203505 lncRNA downstream 13841 670605 ~ 712473 (+) False epor
TU203507 lncRNA downstream 33434 690198 ~ 690759 (+) False G150376
TU203508 lncRNA downstream 33434 690198 ~ 690759 (+) False G150376
TU203511 lncRNA downstream 33434 690198 ~ 690759 (+) True G150376
TU203513 lncRNA downstream 33434 690198 ~ 690759 (+) False G150376
XM_039824306.1 mRNA upstream 4585 557705 ~ 651022 (+) True rab3db
XM_039824253.1 mRNA upstream 108113 538953 ~ 547494 (+) True tmem205
XM_039824254.1 mRNA upstream 110546 538953 ~ 545061 (+) False tmem205
XM_039824255.1 mRNA upstream 112406 538953 ~ 543201 (+) False tmem205
XM_039824252.1 mRNA upstream 128891 493970 ~ 526716 (+) True cnn1b
XM_039824307.1 mRNA downstream 5266 662030 ~ 679779 (+) True epor
XM_039824308.1 mRNA downstream 13824 670588 ~ 679781 (+) False epor
XM_039825771.1 mRNA downstream 36328 693092 ~ 721282 (+) True znf653
XM_039825772.1 mRNA downstream 36328 693092 ~ 721282 (+) False znf653
XM_039823786.1 mRNA downstream 74211 730975 ~ 753667 (+) False tspan35
XR_005641824.1 other upstream 112405 538953 ~ 543202 (+) False tmem205
TU203455 other upstream 424696 228962 ~ 230911 (+) False G150336
TU203459 other upstream 424696 228962 ~ 230911 (+) False G150336
TU203421 other upstream 454176 159507 ~ 201431 (+) False G150326
TU203545 other downstream 190159 846923 ~ 867735 (+) False LOC120573939
TU203532 other downstream 317482 974246 ~ 993222 (+) False LOC120574276
TU203395 other downstream 365285 1022049 ~ 1023521 (+) True G150304
TU203568 other downstream 478445 1135209 ~ 1220823 (+) True G150398
TU203645 other downstream 513529 1170293 ~ 1175782 (+) True G150450

Expression Profile