RNA id: TU203645


Basic Information

Item Value
RNA id TU203645
length 4459
RNA type TUCP
GC content 0.44
exon number 5
gene id G150450
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1170293 ~ 1175782 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cTTGTTTcactatatttatattatatcattAAATTCAATGTAGTACCTGAAACTAACCACAGGGGGGACAGACGGCGCTGCCCGCCCTCAACACACGGTCCCAgcgaagagagaaaagagacagagaaaggcaCGAAGAGTTTTGAAACTGAGAACAAGGACAGTGGACATGATGATTAAGAGGGGAGGGGAAAGGTGCATGTAGACAAATACATGAGCAACGAAAAACAGCGGTAGGAAATGACTGGGGGATGCATAAAGAAAAACAGGCAAGCTCTAAACTGATGATGAAGACAGAGCGACACGAACGCAGGCTGATGACAGAGACCACGGACACAGAAAGGCACAAGTAGAAAAAGTAGGTATTTTCATTGACATTTTCTGCTAATTGTAGATTAATTTTTGACCCTTGATGaaaggaggatgaggaggagaagacCGCATGAAAACATACCGTAGCCTTGACAATCAGGCCTTCAGTTTGCCTTTCTTTttatccccaaaaaaaaataaaataaaaaaggcacaaacacatttttcaattaCAAGATGGAGTCGGAACAAGTGTTACATGGAGTAAGCAtacaaaatcaaaataaaacaaataaaattaataCTTATTATTCTGACCGTCGTTATTATTTCCATCAATAATTATTGTTATCAATCATTTCTCTCCCAGTTCAGCTTGTGTTttatgtcagagagagagagagacagacagagagagagacagagagagacaccgagacagagagagagagagagagagagagagagagagagagagacagagagagagacagagagagagagacagagagacagagagagagacagagagagagagagagacagagagagagagacagagagatgtaCTGAGTGCTGCTGCTGAGTGTGACTGAGGTAAAGGGTTTCCTGCCTGCTGCAGGTCATGTGCCACTTAGACCCAAAACATTACATCACTCCGTTGTGCTGAGAGAACGTCCAACCAAACTCCATTAGAAAATCTGTCAATTTAGTGCTGCCTGGCAAACGTGTTCTTTGagaaactttaacacagattatATCCCTTTGTTTAAAACATTTGAGTCTGCTCCATTAATCTTTATATATTACTAATAATAAGAATGTATTTTTAATTCATTGATAAATTGTTAAGTCTATCAAATGCCAGAAGAAACCACACCCAAAGTCGCTTTGCCTTACACACGTTCCAGTTTTAgaccaaactccattcaaaaaTCTGTCAATTTAATGTGTTAATTATGCTATCTTGAGTGCCGGCAAATGTGTTCTTTGGGGActtttacaaatacaaatatacctttttttaaatacattttagtcCGTCCATAATCTTGCTCCACTAGTATTAATATATTACTAATTTTAATAATTGATACATTTTTTGTGTCTCCAAATACAGTTTTCAATTAGTTTTGTTTTAcaaccaaactccattcataAATCTGTCAATTTAATGTTTTCTTGTGTGGTGGCAAACATGTTCTTTGGGAAACTTTTATACAAATATTAAACATTTGAGTCTGCCTACAGTCAGTGCAGCTGcaatttaagattatttttgttattacactttttgtaataattgctcAATTGTTCAGTTTAAAAGAGCCACACATTATGATACTTTATCTCGCTATTTCGGTGCCAAAACACtatgtatattttatatttgtacatttgtttATGTTACAGAACTcttacatttgtatttatttgaccCTATTCTCTAATTCTCTGTATTTTGGACGCCCGTGTGCTTCTGCAACAACCAAACTTTCCCTCTGGGGATCGATAAAGGTTTTCAATCTTAtcttaaaatgtccaaaaagttCCCGGAGCTGTAGGTGTAGTCTTCAAATGGTTTTATCTGGAACAAAACTCTAAAGATATTaaatttacaaaaacataaaaacaaagaaaagcagcaaattctcacatttcAGAACCTGGATCCAACAGATGTTTTTCTCTCGATAAATGAAAACATATCTAAATCAACATTAgtgttagtattattattattattattattattattattataataatacattcaaccatttatttaaaattcacATTACACACGTCGGTTTGGTCTTGTAGCTCTTCCAATCAGACACGAGCGTCATCGGGTATTGACGTTAATATATTAACAGGGCTGCACAAcatagggttttttttttttttattaaatcgcCATCGCAATATCAACCGGCGCAATAAACACGCCACGGAAGGCCGCGACACATCGGGAAACACTCGGATACAGTCGGCAGAAAACGGCTCTTTAAAAAGCATTCTGGTTTCAGCTTTTAGATTCAATTCAATGTCCAGTTTGTTCAGTGAAAGAAAGTTGGggatgatttcctttcattagtTTTGAATTAAATGCAACGAGCAGTTTGTTGTGTATTAGCCAACGTGACGTCATGACTTAAACGTGCACGCCACTTTCTAACGCCACGCGGCGTGTTACcgcgaggctacggttgggtttaggaaacgccACACGATGctccggtctccggggtgacaTTTCCCCCtgtcatactactcgctacggcgtcaattcccACGCAACCTcaagctaatgtaagtcaatggaggccaaacggcgccGATAAACACGCTGAAAAGAGAGCGtgcgtcttcataacacgccaataatggcgtaCGAAGTGGCGTGTCGTACATACAccacttcatgacatcagtctggttttagcagaatactgaaagcagcagaactgagaacactttaaagGAGCACgcagacttattgggactttatcttattcacagtacccccagagttagactagtccatacagacccttcagtaacccccagagttagactagtccatacagacccttcagtaacccccagagttagactagtccatagaGACCCttcagtaacccccagagtcaGACTAGTCCATAGAGACCCttcagtaacccccagagttagactagtccatagaGACCCttcagtaacccccagagttagactagtccatagaGACCCttcagtaacccccagagttagactagtccatagaGACCCttcagtaacccccagagttagactagtccatacagacccttctcacagtaacccccagagttagactagtccatacagacccttctcacagtaacccccagagttagactagtccatacagacccttctcacagttacccccagagttagactagtccatacagacccttctcacagttacccccagagttagactagtccatacatacccttctcacagtaacccccagagttagactagtccatacatacccttctcacagtaaccctgggggttacagtgagaagggtatgtatggactagtctaactctgggggacacggtgaataagataaagtcccaataagtgggcgtgttcctttaatatcTGGTTATTATCGGCGCGATATTCAGCACCGTTAGGGGACGCTGTCCTCACATGGTGCAGCCCTGTGAGGAGACGTAGGGTCGTTTAGATGGAGCGTGCTGTGACGGGGTCTCCGTACCAGCGAGGTTGTAAAGCTTTGGGGCTACCTGCCACAGGACACATGTCTGAGAGTGTGCGCGCCGATCGGCAGGACCACGGTGAGGTATCAGGACCGGTCCAGCTCTCGCCGCTGCTCGccgagaggagagagagagccggGCTGGGACTCGTACCGGCAACACTAAAACAAAGCTCATGTGACTACCTAAGAATTAAAGAAATGTACCGCTAGCTGGTGTTGTAAAGCTGCTCTCACccgtcttttctctctctctctctctctcctttagtGTTAGTATTTTATcacctcctccttttcctcctcctccgccttgctaacaaaataaaattactGGTTATGAATGGCTATGATGCCTCATCCAATCTCACATTCGTTCGTtcattcacactcacacacacacacacacactcctccctcCATCAGAAGAAGGAGTACTGGTTGTCGATGGCTCGGGGCGGCCtagctccctccctctcttctccctccACAGCGTCTAGTTGGCGGAGAGGAGTGtccctgtccctctcctcccagtcttcctctcctcctcctcctgttggCGGCGTCGCCATGGTAGCCacagcctctcctcctcctgctgctgctgctcctcctgctgctcctgctcCTGGTGCTGCTCCTCCTGGTGCTCCTGCTGCCTCTGAGTCGTCTCCTCTCTCctggggaggggtggggggtgggggccGGCCCGGGGGCAGTGGAGGAGGCTGGGGGGGGCTACGGGGTCTGCTGGTCAAGTCTGCGAGGAGAAGATCCAGAccagagaaagagatggagaaggGGAAGTGAGAGAAAAGTGTAAACAAAGGAaggcagaggaggagggaaaaagGGTAGTGAAGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203624 lncRNA upstream 16581 1122575 ~ 1153712 (+) True G150433
TU203567 lncRNA upstream 37108 1108097 ~ 1133185 (+) True G150397
TU203616 lncRNA upstream 70662 1081881 ~ 1099631 (+) True G150428
TU203612 lncRNA upstream 89178 1079059 ~ 1081115 (+) True G150426
TU203610 lncRNA upstream 89178 1079831 ~ 1081115 (+) False G150426
TU203554 lncRNA downstream 59766 1235548 ~ 1254020 (+) False G150388
TU203555 lncRNA downstream 76015 1251797 ~ 1254020 (+) True G150388
TU203665 lncRNA downstream 109147 1284929 ~ 1308373 (+) False G150465
TU203551 lncRNA downstream 148280 1324062 ~ 1325100 (+) False G150386
TU203670 lncRNA downstream 164330 1340112 ~ 1341711 (+) True G150470
XM_039823702.1 mRNA upstream 62997 1068482 ~ 1107296 (+) False LOC120573839
XM_039823703.1 mRNA upstream 62997 1068482 ~ 1107296 (+) True LOC120573839
XM_039823704.1 mRNA upstream 70069 1068480 ~ 1100224 (+) False LOC120573839
XM_039823697.1 mRNA upstream 107700 1033169 ~ 1062593 (+) True LOC120573835
XM_039824567.1 mRNA upstream 149024 974206 ~ 1021269 (+) True LOC120574276
XM_039823695.1 mRNA downstream 227200 1402982 ~ 1419898 (+) True LOC120573834
XM_039825098.1 mRNA downstream 309812 1485594 ~ 1498100 (+) True jmjd8
XM_039823747.1 mRNA downstream 591859 1767641 ~ 1775294 (+) True LOC120573865
XM_039823746.1 mRNA downstream 593294 1769076 ~ 1776571 (+) False LOC120573865
XM_039823745.1 mRNA downstream 593294 1769076 ~ 1776569 (+) False LOC120573865
TU203395 other upstream 146772 1022049 ~ 1023521 (+) True G150304
TU203532 other upstream 177071 974246 ~ 993222 (+) False LOC120574276
TU203545 other upstream 302558 846923 ~ 867735 (+) False LOC120573939
XR_005641826.1 other upstream 513529 655607 ~ 656764 (+) False LOC120574137
TU203564 other downstream 40100 1215882 ~ 1216669 (+) True G150394
TU203556 other downstream 76015 1251797 ~ 1254020 (+) False G150388
TU203557 other downstream 76015 1251797 ~ 1254020 (+) False G150388
TU203663 other downstream 119836 1295618 ~ 1300758 (+) True G150465
TU203548 other downstream 148280 1324062 ~ 1325100 (+) False G150386

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2560080 True 1279 lncRNA 0.40 1 NC_050570.1 44348942 ~ 44350220 (+)