RNA id: XM_039824234.1


Basic Information

Item Value
RNA id XM_039824234.1
length 9419
RNA type mRNA
GC content 0.47
exon number 15
gene id grin2aa
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 7569718 ~ 7723914 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATCTATCCAGCTGCCCCTGCCTCTGCAGAAGCACGCAGGCATACACATAGACAAAACGCGAAATCACACGCACGCGTGCGCATTCGGCACACGCGTACAAgctccctctctcacacacacataggctacACGTGCacgacgagagagagagagagagagagagactttggGAGCGGGTCCCATGCACGGTTTGCATGCTCCCGGATCTTCTACTGTAGTAGTCAACGTGCATGTGCGTCTATGTGTGCGTCCGGCGGCTGCTCACctgcctcttcctctcctcgCCCGGGACAGGAATAACGGGATACCGGGAGCTCTAAACACACGGAGGCAGGTTGAGCCCCCACAATGCGCGGGGCGAGCAGAGATTGCAGTGGAGAATCAGCGGTATAGGCGCACACACAATGAAGATTGGATTACAACAACAGTGATTTTATTCGCAGCTGCGTGCCCGCGAAGTACTAAAACAAGGGGAtttcattcagtttttttttttggacacgGTGGAAATAATTAATTGCCAGAGATTccgtgatttttatttattttttcttcttgtgcagtgtttgtgagtgtgatCCCATATCGCAGGCTGCATGGTTTctcagaggagagaggggactGTTGCAATGTCATCTCACATCACTATTTTGGAGCTCTGTGGAAGGGAGATGCTGGGATGAAGTGGTTTGGCATTATGTCCCTCAGCAGCAAAAGGAGTAAGAGGAGTAGAAGGAGCGGCAGTTGCAGCAGTAGCAGCGGTAGTAATAGTGTGCTGCTGTCCTTGACTCTCCTGGTGGCGGTGACCCTGATTGCGGACCCTGTGGCGGCTCAAAAGCAGCGAACTGGCAGTGCCTCGGAAAAAGTGCCGGTCCTGAACATTGCGGTGATCCTGGGACGCACACGCTACATCTCAGAGCGGGACATCCGGGCACTGTGGAGCAAGGAGGACCCCATCGACGTCAACGTGGTCACACTGCTGGTCAATGAGACCGACCCGAAAAGCATCATCACCCACATGTGCGACCTGATGTCCGGGACAAAGATCCACGGTGTGGTGTTTGGGGATGGCACCGACCAGGAGGCCATCGCCCAGATTTTGGATTTTATTTCCTCGCAGACGCTCATACCCATCCTGGGCATCCACGGAGGCTCGTCCATGATCATGGCTGATAAGgaTGTGAAGTCGACATTCTTCCAGTTCGGTGCCTCCATCCAGCAGGAGGCTCTGCTGATGCTGAACATCATGGAGGAGTATGACTGGCACATCTTCTCCATTGTCACATCGAAGTTCCCCGGCTACCAGGAGTTCATCAACATCCTAAAACTTACCGTGGACAACAGTTTTGTGGGCTGGGACCTGCAGAATATCATTATTCTTGACGCGGTGGAGGAAGACAGCCGGTCTCAGATCATGCTCAAGAAGGTCCAGTCCCCAGTGGTCCTGCTCTACTGCTCCAAGGATGAGGCGGTGTACGTCCTGGAGGAGGCTCGCTCCCTGGGCCTCACCGGATTTGGATACATCTGGATTGTGCCGTCGCTCACCACTGGGAACCCGGAAATAACACCCGAAGAGTTTCCGCCGGGAATGATTTCAGTGTCATACGACGACTGGGACTACCCGCTGGAGGCGCGAGTTCGGGACGGTCTGGGGATCATAACGTCAGCagcggcagccatgttggaggAGTATGGCGACATCCCTGAAGCGAAGACATCCTGTTACGGCCAGATGGAGAAGACAACCAAGCTGCCACCCAGTGCACTACATAAGTACATGATGAATGTGACATGGGATGGCAGAGACTTGTCATTCACAGAAGACGGCTACCAGGAATACCCAAAGCTGGTGGTCATTGTTCTCAACAAGGAAAGAGAGTGGGAGAAGATGGGGAAACTGGACAACCGCAGCCTGACGCTAAAGTACCCAGTGTGGCCGCGCTTCAACTCCTTCGGTGATGCCGAGCTCGATGACAACCACCTGTCCATCGTCACGTTAGAGGAGAAACCTTTTGTTATTGTGGAGGACGTAGAAAGGCTCACCGGTACCTGCATGAGGAACTCCGTGCCCTGCAGGAAGCATATCAAAGAcAACACAACAGAGGCTGGTGGGACATACATCAAGAAGTGCTGCAAGGGCTTCTGCATCGATATTCTGAAAAAGATTGCCAAGTATGTAAAGTTCACCTATGACCTGTACCTGGTAACCAATGGCAAGCATGGCAAGAAGATCAACAATGTCTGGAATGGGATGGTGGGAGAGGTGGTCTATAAGAAAGCCGTCATGGCCGTCGGATCTCTGACGATCAATGAGGAGCGTTCTGAGGTCATCGATTTCTCCGTCCCGTTCGTGGAAACCGGGATCAGCGTCATGGTCTCCCGTAGCAACGGAACGGTCTCCCCGTCAGCCTTTCTAGAGCCATTCAGTGCATCAGTGTGGGTGATGATGTTTGTGATGCTCCTACTGGTGACTGCAATGGCTGTCTTCATGTTTGAATACATCAGTCCTCTTGGCTTTAACAGAAACCTGGCGCAGGGAAGAGACCCTCATGGCCCTTCCTTTACCATGGGCAAGGCTGTGTGGCTGCTGTGGGGTCTGGTCTTCAACAATTCTGTGCCAGTGCAGAACCCTAAAGGAACTACCAGTAAGTTCATAGTGTCTGTGTGGGCCTTCTTCGCTGTCATCTTCCTGGCCTCCTACACTGCCAACCTGGCTGCCTTCATGATCCAGGAAGAGTTTGTTGATCAAGTCACCGGGCTTTCCGACAACAAGTTTCAGAACCCGTACGCATACTCGCCTCCGTTCCGTTTCGGGACGGTTCCAAACGGATCCACAGAGAGGAACATCAGGAAGAACTACCCCGCTATGCACCAGTACATGGTAAAATATCATCAAACCGGAGTCGTGGACGCACTTGTCAGCCTCAAAACGGGGAAACTGGATGCCTTCATCTATGATGCTGCAGTGTTGAACTACATGGCCGGCAGAGATGAGGGATGTAAGCTGGTGACCATTGGCAGCGGGTACATCTTTGCTACCACCGGTTACGGCATTGCTCTACAGAAAGGCTCCTATTGGAAACGACAGGTGGATCTGGCTATCCTGGCCATCATCGGAGACGGTGAAATGGAGGAACTAGAAGCCCAGTGGCTGACAGGAATTTGCCACAACGAGAAGAATGAGGTGATGTCCAGTCAGCTTGATGTGGACAACATGGCTGGGGTCTTCTACATGCTGGCCACGGCCATGGGGCTCTCCCTCATCACCTTTGTGTCTGAGCATCTCTTCTATTGGAGGCTTAGATATTGCTTCACTGGGGTTTGCACCGGCACACCAGGTCTTCTCTTCTCCATCAGTAGGGGAATCTGGAGTTGCATCCATGGAGTCCACATTGACATGAAGAAAAAGTCAGATCTGGACTTTAGCCCCCAGGACAAAATGCTTAAGCTCATTAAATCAGCAAAACAGATGACCAACATGTCTAACCTGAGTGGCTCCCGCATGAACTCACCCAAACGTGAGTTCATGCACTCAGCTGGTCCCATGATCATGGACATGATGGCAGAGAAGGGCAACTTTATCTATGCTGACAACCGCAGCTATGCTCCAAAAGATATGATCTATGGGGACACTGGTGACCTGCAGTCTTATCTTGCTAACCGCCACAAAGACCACCTTAACAACTACATCTTCCAGGGTGGCCAGCATCCTCTGACCCTAAATGATGCCAATCCCAACACAGTAGAGGTGGCAGTGAGTGCTGACTCAGTCCAGACCAATGCCAAGCCGCCCCGGACCCTGTGGAAAAAGTCAGTGGACACACTTCGTTCAGGGCCTCCTGGGCCCCCTCCGATGCCTGACATGCTGATGCCAGATTCACGAATGTCGATGAAGACACAGCGCTACCTCCCTGAGGACGCAGCCCACTCTGACATCTCCGACTGTTCCAGTAGAGCAGCCTCCTACAAGGACCCAGAAAACAACAAGCACCTGAAGCCCAAggacaacttaaaaaaaagaccGATGACGTCAAAATACCCAAGGGACTGCAGTGAGGTAGAGCTGTCCTACTTAAAGACTAAGCAGGTCACCGGTGGAACCAaccaaactgggagaggaggaggaggagagaaaattTACACTATTGACTCAGAACGAGAGCTGAGCCTGCACTCAGACCCCATTCACTATCGTGAGAGTCGTGGCCTCGCTGCAGACGATTTGGATTATCCCGAGATCTACTCCGACCACAGTGACAACTATAGGAAGTGTGAGCAGCCCATCATTCATCTGAACTCCTCGCCTTTGCATCATACCGATTCAGATCTTCTACCAGACCCAACTTACTCTAAACACTACACCatgaaagagaaaaacattgtCCTGTCCCCACATGAATCCATCGACCGCTATAAACAGACACACTGTCGTTCCTGCTTGTCAAAAGTGAGTGCTAGCTACCCACCGGGAGCGCCATACACTCCTGCTGTACCTGCTGCAGCTTCTGCCACACGCTCACCCTATAATCGGTGTGAAGCATGCCTCCACACAGCCAACCTGTATGACATTAGTGAGGACCAGCTCCTTGCAGACCCCTTGGTCAGTCCCACCAGGCAccaccaacagcagcagcaaccagATGAAATGTTTGGTCTGTACTGGCCACAGACAGATGGGCCACATGTTCAAAAGAGAAACCGCTTGAGGCTGAGTCGTCAGCACTCCTTTGACAACATCATGCTTGAAAAGCCCAAGGATGTAGACCTGGGCCGACCGGCACGCAGCGTCAGCCTCAAGGAGAAGGATCGCTTCTTGGACTCCACATCTGACTCGCACTATGCGAACCTCTTCGGCATGCGTCCCTACTCCGGCAGACTGTTTGGCACCGGGTCCAAATCAATGCTGTTTAACCACAACCTGGAGGAGAGCAAGAGGAGCAAGTCCCTGTACCCGGCCCATGGCTCGGAAAACCCTTTCCTCAGCCACTCGCTGAGGGATGacaccagcagcagactggtcCATGGGCGTAGCTCCTCTGATATTTACAATCAGCTGGCGGTGGCCTCACCTGCAGCGGCTGTCGGAGCGCCCCCCATCAAAACACGCAACGATGCGAACAATCTCCGCTCTTCCGTTAAATCCACCACTTCATACTGCTCACGGGATGGGCGGATAGCCAATGACATGTACAATAAAGAGCATGTGATGCCTTACTCAGCCAATAAGACTAGTGCATACCCGGCCCCACGTGGCGTCCTAAACTCAGCCCAGTTCAGCAATAGACGGGTGTATAAAAAAATCCCCAGTCTGGAGTCAGATGTTTAGTTGACATAAGAAATGATGTGTTCTCTCCTCCTTACTGCTCTCTGGGTTTGTATTATAATTTATCAACTATGTTATCCACCAAGGGATGCCATAGCCACACtacgtttttcttcttctcttcgaCATTGTAATCCAAAAGAACTCGTGCCCACTTGGGTACGAcggtactactactactactactactactctctttgcagatgatatcATAATTTTTGTCCATTCTCTGCCATGTACCAATGAGTTGGCTGCATGGCTGGCACGCTGCCATAAGGTATCCTGGTATAAAGGGGAGGGGAATCATTAGCCccataggttttaaaaaggtttagGAAATGGCATAGTCCCATGATTGGGACAGAGAAGGCCTAATTTACAGTAAAGGAGGACTCCTACAGAGGTTGTTTGTAAGGAGGCATTTGATTTGTGATTAAAATGTGTGAGAAAGTGGTGAGGAGGATGGGAGAAAGTATATGAGAGGGGAattagagggagagagagagaggggttaaCCCCTACTCCTTCCCCCCTTTTTCCTTTTCACCTCCACTGTCAAGCTTGCAGCTTGCTAGTTGAGGAGAAGAGGCCTGACAGAGAGACCAGATGGGCACGTTTGATGTCATGGCCAGACATGGAGGCGTCCCAGGAGGGCAGGGGCATCACAGTGAGCTAGTCCAACGGTCTGCTGCTTGTTACTCTGACAAATATGGCCACTGAGGCACCTGGCAGTgcaagaggagagggagggagaaaggagaTGAGCGGCTAAATGGCACAAAGTGGAGCCTCCAGTTGTTTGTGGCAGTAAGGTATCGGTGTGCTTGGTCAGAGTTTGGTTTTATGTGTTAAGCCCATGCTAAGGGACATGATAGTGATGAGAAGCTGAGAGTAATGTAGGTGCTATCAATGAATAATGTTTACAGACTGACAGATAAAAAAGACAAACTGACAAAATCTCTGATAGAAAATGACACACAAGCAGGGAAACCTGAGGCAATTGGTGGGCATTTCATTTATGGCTCTGCACATAGAAAAATAATTgcaaagtattgcttttttattctATTAAACTATAAGATTTATTAGGGATTCTGGCATCCGGATCCCCCTATGTAGGATTTTAGTGTTTGCTTATTTGGTAGCACAATAGCCATTAGTTTTAAAACCTCTCTCCCACATTTGCTTTTGAAAAAACATAGCTTTCTGAAAAATACCATCAAGAGTAGTAGTTTATTTTGcatgtgttgatttttttctgtgtcggagatgacaaaatacacacaaatacactcttagacacatattttacatgtttttgaaAAGGGACTGTCTTGCCAGGGATGGTGGATGGATACTTGTACAATCGAAACCTTTATCCTGACCTTTGTGCTTAGTAAATCAGTGTCATGCTGTGGCTCCTGCTGCAAAAGAGCAAGACAATGGTGGAAGGGAAGAGAGCAAAGAGGATATAAACAAGGGAGAAAAGGATGAAATGACAACTGTGTCCATGAAAACCTTATCTGAGTTGGGGAGGGAGTGGGCGCcgatgtgtttttgtcttttgaccTCCCAGAGAAACAGGGTATtacctattaaaaaaaaaatacattgacgattccttccttctttcctccttccttcttccctTCCTTAAACAACATGACACATCACTAGAGTGAATGActatagaactacttcacttTATTTCTTTTGGCTTTTGTAAAATTGAACTTTGATTGGGTTTGTTTGGTTGGTTACTTTTGGTTGGATAGCAGAGCTATACGGTATCTAACCACTACAGTCAACGGGATTGGTTTAACAATTATTGATAATCAATTACCGTTGGTCCGGAGTCAACCAAGCTCTTGAGAATCTGAAGATTACTTGAGATAGATCCCTTGTTTACCTTCATAGCGTTGTTTGGACTGGGCAAGATGGAGGAGGATGGAGCCGAGGAGGCTCCACTGTTATGTGCTCATCAATCATGTATCCATCTTCGTGTGGAGTAAGTTGTGTCTCTGCATGGCAGAACTCGGGTAAGCTTGAAGTCTTAACCAGAACATTTGGTTCCTAAACTGattgtttatgtatttgtttgtttgttctttttcaTAACACTTAGCAGTAAAGACTTGCACATGCACATTCTTCCATGTACACGTGTGCCCACAAAAAAAACCTGCTTTTTTTTATAGTATTATGCTGTACAAATAGTACAGTCAAAAGAAAACCATGTAACCATCTTAACTGACTTGATTGATTTGCTTGATTGATTGGATTCACAAAGCCAAATTGTATCAAATAAAATACCTCAGGATGATTCTGTGCATTTTGGGGGGAGCTTCAACCGTAGCAACAGAACAGTATGCGGCGCAGATTTTTTTGTagaaaaagaaattataaaaaaaaaaaaaaaaaaaaaagattaagaaaAACAACTGATTTGTAACGGCCGCAAAGCAGAATCAAACTTTTCTCCTTTTGATGTTTACCAGTCCTAGGTCTTCCAGTTCGGCTCTTTGCCCGGGCTCATGCAACCCAAGTAAAGTGAGAAGAGGAAGTGAAGAAGGGATGGCAGTAGGGGGATTTAGGTGGTTTTTGCTCAGTGAGGGGTGGGTTGCgtgcagcttcactcctgagcGCCCTCAACAGAATGGGGGATGTTACTTGAACGTCCAAATCCTGAAAAGCTACCCTTATATGGAATAATCAAGCAGGAATCTCTTTTCTCTCAATGGTTTTTAACGGCAGTCGACTGCATTCGCCACTGTGTTTCAATTGAAGCTCCATGTTTAACAGCCGCGGTCATAACGCCCTTTTTGTATTCTTGGAATACTGCAGTGAACCTCTCCTCTCCTAATCAATCAGCTTACCCGATGTTGACTGACGAGCAACATTTGTCTTTCTTTGCATCTTATCTgcatatttattattatgatcATATTTATCTCCACATGCTGCTTGTGTGAGCTGACCAGTGAACAATATGCACATGTAAAAAATATCAAACGGCACCCTCGCGTTTTATGAACTCATGATGATTTGTTCGATTTGTTCTACTTTTACAGAACTGTCATGTAAACTGATGCTGTTTTAtgttcaaacacacactcactcacacacacacacacatgcactcacacacacatacatacatacacacacacacactcactctctctctctctctctctctcagacacacCCTTGTGATGACAACCCTGCTCTttttaatgacaaaaatgtattttaattacatttaatgaTAAATAATGAGGTGATGGCATGCAACCCAAGATGTAacaattttaatgttttatgtttcttttttctgtttctttttttttttgttatgatgTTATGATCACTAATGCGTTGTAACCAGGTGTGAGTATATacatatttgagagaaaaaaaatgatctaTGTTTAACACAATGaagatgctgctgctgttttgggGGAGAAGACGAGGACCTGACCCTAGCGCAACTTCCTCATTGGATGACCGGTCTTTTATCAGGCCACGGTTTTGCTCAATGGGGTGGCGGGTCAGGGGTCAGGGCTTGGTTTGGTACGGCAGGACATCCTTGCTCTTCCTCCAATGGCAGGTGAGAATTACTGTATCACCAGCTCTgcttctctcttccctctccttcATGTGTAGTCAGGACTTCAACTGTAAagaagataaaagaaaaaaaaagcaacccTCTACTTTGAGTCTGCTATCCCTCCAAAGATACGAGACCTTTTTCTTTATGGTTTGCTGTAAGaatagagcttttttttttttaaactaatactTCCTCAAAGACTTTTAAGGAACTATTTTGAATATATTTAGAAATGACACCTGTATACATCGCTTGTAAATTCATACTGGAATACATCATCATGGAGAATTATAAATGATAAAGagtaaaaacaatattttttgtgtGAATTTCACAGGAGCTCTTCTGTACAGTGgcactgtttctctctctctctttctctctctctttctctttctctctttctctctttctctctttctctctctccctctctctgtagagCGACTAGAATAAAACTTCACCATTCACAAC

Function

GO: NA

KEGG:

id description
K05209 GRIN2A; glutamate receptor ionotropic, NMDA 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206913 lncRNA downstream 91212 7478319 ~ 7478614 (-) True G152756
TU206905 lncRNA downstream 199973 7367794 ~ 7369853 (-) True G152748
TU206894 lncRNA downstream 212988 7330810 ~ 7356838 (-) True G152738
TU206880 lncRNA downstream 363732 7204314 ~ 7206094 (-) True G152729
TU206881 lncRNA downstream 368914 7200687 ~ 7200912 (-) True G152730
XR_005641917.1 lncRNA upstream 339087 8063001 ~ 8066280 (-) True LOC120574882
TU207058 lncRNA upstream 364012 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA upstream 364012 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA upstream 364012 8087926 ~ 8092269 (-) False G152863
TU207064 lncRNA upstream 364012 8087926 ~ 8092269 (-) True G152863
XM_039824628.1 mRNA downstream 247738 7305634 ~ 7322088 (-) False nubp1
XM_039824627.1 mRNA downstream 247741 7305634 ~ 7322085 (-) True nubp1
XM_039824625.1 mRNA downstream 267392 7277866 ~ 7302434 (-) True ciita
XM_039824626.1 mRNA downstream 272013 7277866 ~ 7297813 (-) False ciita
XM_039824615.1 mRNA downstream 299035 7214348 ~ 7270791 (-) True clec16a
XM_039824204.1 mRNA upstream 15665 7739579 ~ 7868877 (-) True LOC120574112
XM_039824205.1 mRNA upstream 15665 7739579 ~ 7868876 (-) False LOC120574112
XM_039824208.1 mRNA upstream 21837 7745751 ~ 7868881 (-) False LOC120574112
XM_039824206.1 mRNA upstream 21860 7745774 ~ 7868882 (-) False LOC120574112
XM_039824319.1 mRNA upstream 209545 7933459 ~ 7964396 (-) True epn2
TU206683 other downstream 849183 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1341712 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1956158 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 358224 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 717265 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1007483 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1088428 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1129846 8853760 ~ 8856957 (-) True tufm

Expression Profile