RNA id: TU208192



Basic Information


Item Value
RNA id TU208192
length 556
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G153663
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10163444 ~ 10169439 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tctttttttttttttttttttttgctctCAAGGTGCAACTGACACTTTTATTACCCTGCGGGCTGCAGTACATCCTGTTGTGTGTATAATTGTGTATGAGCACTTTTGGAAGGGTGGTGTTCAGTTCACAGCCATTTGTATGTACTTTGAGATAGTCCTTATTTGCATATGAGGGAGGGATTACTATGGGGCTGTTTGGGATGATGAGTCCCTTGTTTCTATTACTATTTGATTATTAGATTATGGTCCTTATTTCTTAGACTCTTTCTAAATTATTCCAAATTATCAACGGCTTCATTTGATATTTAAGATAAGTGTTGCTAAAACGACCATCAAATAATACTTTAATGTGAAACTCCTTAGAAATTAAAAGATATAGACACATACACTATATAATATGTTAAGCATCGTTTAATGTGGCACTGTATAAACCAATATTGTAACTTGCTTTACACCAaaaccaaagaatagtgtgttTCAGCTCAGTGTTTGGTCACCTCATGTCCGGGCAATGTCATAGTTGGCTACGAACCAGTCGCAAGTCATCTTTATAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208150 lncRNA downstream 124659 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 135745 10025317 ~ 10027699 (-) True G153630
TU208146 lncRNA downstream 138317 10024923 ~ 10025127 (-) True G153629
TU208138 lncRNA downstream 138678 10020171 ~ 10024766 (-) False G153623
TU208139 lncRNA downstream 138678 10021425 ~ 10024766 (-) True G153623
TU208203 lncRNA upstream 117196 10286635 ~ 10294166 (-) True G153671
TU208277 lncRNA upstream 425304 10594743 ~ 10595007 (-) True G153734
TU208577 lncRNA upstream 735916 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 781132 10950571 ~ 10959521 (-) True G153950
TU208584 lncRNA upstream 863767 11033206 ~ 11035516 (-) True G153943
XM_039824130.1 mRNA downstream 13962 10063992 ~ 10149482 (-) False cacna1aa
XM_039824129.1 mRNA downstream 13963 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA downstream 13963 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA downstream 13963 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA downstream 13963 10061286 ~ 10149481 (-) False cacna1aa
XM_039824227.1 mRNA upstream 182719 10352158 ~ 10390133 (-) True gtpbp1
XM_039825337.1 mRNA upstream 439559 10608998 ~ 10618057 (-) False luc7l3
XM_039825336.1 mRNA upstream 439559 10608998 ~ 10618056 (-) True luc7l3
XM_039825340.1 mRNA upstream 503903 10673342 ~ 10677290 (-) True LOC120574864
XM_039824400.1 mRNA upstream 569469 10738908 ~ 10772253 (-) False spag9a
unassigned_transcript_828 other downstream 340451 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 424957 9737970 ~ 9738487 (-) False LOC120574579
unassigned_transcript_821 other downstream 426610 9735626 ~ 9736834 (-) True LOC120574583
unassigned_transcript_820 other downstream 430249 9732686 ~ 9733195 (-) True LOC120574609
unassigned_transcript_819 other downstream 432301 9730652 ~ 9731143 (-) False LOC120574633
TU208206 other upstream 191362 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other upstream 191373 10360812 ~ 10390120 (-) False gtpbp1
TU208212 other upstream 191373 10360812 ~ 10390176 (-) False gtpbp1
TU208443 other upstream 614673 10784112 ~ 10791539 (-) True LOC120574455
XR_005642003.1 other upstream 798667 10968106 ~ 10968174 (-) True LOC120575512

Expression Profile