RNA id: TU208150


Basic Information

Item Value
RNA id TU208150
length 523
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G153631
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10034440 ~ 10038785 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGAAGGCATGGCCCTTGACCACCACAGAGACATCGCAGTAGAGGCCCTGCAGCCGCTGCTCATTCAGACACTCTAAAACATTGTTGCCAAAGTTTGGGATCGCCATCTGGAGGGTCTGGGCCATGGTGCGCCTACGCACACCACCAAAGGGTCCCCTCGTTGGGAAGTTAACGCAGAGCGTTGGTTTAAAGGAGGAGACGCAGCGATCTCTCTTCCCGTTTTCCCTTGCTCCAGGCAGCCATTCAGTGTGAGCTAAACGCCGATAGCAGAGCCATCGAGGCTGATACAGTATCCCAGGGGATTGCGGAACACAGAGCCACTGATCGCACGGAACATAAGAGGAGGAAGACAAGCATGACGCGCTCGTCATTCAATCGGATGATCGTTTCGAGAGCAGCCTCAATTTGGGAAGACCTATCCCACGGCGTAGACTGTTTGCGCATTGgcacagcaacagcagcagcagcagcagcctgcaaGGGAAAACCGTCACTCTCTGTTGCGATAGAAGTGGGAAAAGT

Function

GO:

id name namespace
GO:0008201 heparin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208147 lncRNA downstream 6741 10025317 ~ 10027699 (-) True G153630
TU208146 lncRNA downstream 9313 10024923 ~ 10025127 (-) True G153629
TU208138 lncRNA downstream 9674 10020171 ~ 10024766 (-) False G153623
TU208139 lncRNA downstream 9674 10021425 ~ 10024766 (-) True G153623
TU208137 lncRNA downstream 10981 10020171 ~ 10023459 (-) False G153623
TU208192 lncRNA upstream 124659 10163444 ~ 10169439 (-) True G153663
TU208203 lncRNA upstream 247850 10286635 ~ 10294166 (-) True G153671
TU208277 lncRNA upstream 555958 10594743 ~ 10595007 (-) True G153734
TU208577 lncRNA upstream 866570 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 911786 10950571 ~ 10959521 (-) True G153950
XM_039825001.1 mRNA downstream 295135 9697643 ~ 9739305 (-) True LOC120574579
XM_039824655.1 mRNA downstream 627636 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 689268 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 986317 9043413 ~ 9048123 (-) True cabp5b
XM_039825615.1 mRNA downstream 997855 9020086 ~ 9036585 (-) True sez6l2
XM_039824129.1 mRNA upstream 22501 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 22501 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 22501 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 22501 10061286 ~ 10149481 (-) False cacna1aa
XM_039824125.1 mRNA upstream 22501 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_828 other downstream 211447 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 295953 9737970 ~ 9738487 (-) False LOC120574579
unassigned_transcript_821 other downstream 297606 9735626 ~ 9736834 (-) True LOC120574583
unassigned_transcript_820 other downstream 301245 9732686 ~ 9733195 (-) True LOC120574609
unassigned_transcript_819 other downstream 303297 9730652 ~ 9731143 (-) False LOC120574633
TU208206 other upstream 322016 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other upstream 322027 10360812 ~ 10390120 (-) False gtpbp1
TU208212 other upstream 322027 10360812 ~ 10390176 (-) False gtpbp1
TU208443 other upstream 745327 10784112 ~ 10791539 (-) True LOC120574455
XR_005642003.1 other upstream 929321 10968106 ~ 10968174 (-) True LOC120575512

Expression Profile