RNA id: unassigned_transcript_820


Basic Information

Item Value
RNA id unassigned_transcript_820
length 413
RNA type V_gene_segment
GC content 0.49
exon number 2
gene id LOC120574609
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9732686 ~ 9733195 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCCATCAGATCACCTTCAATAGCAACCATGTTCTCtgtagctctgctgctgctgctggctgctggatCCTgtgtgaagtgtgaacagtTGACCCAGCCAGCCTCTGTGACTGTGCAGCCAGGTCAACGTCTGACCATCACCTGTCAGGTCTCTTACTCTGTTAGCAGCTACTACACAGGTTGGATCAGACAGCCTGcagggaaaggactggagtggattggAATGGCAGTTGGATCCACCACATACTACAAAGATtcactgaagaacaagttcagtatcAGCTTGGACTCATCCAGTAACACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagagagccacagtaacacaaaccatcagtagacctgaacaaaaacccctca

Function

GO: NA

KEGG:

id description
ko05310 Asthma
ko05323 Rheumatoid arthritis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207938 lncRNA downstream 17625 9288303 ~ 9715061 (-) True G153498
TU207921 lncRNA downstream 129580 9602857 ~ 9603106 (-) True G153481
TU207998 lncRNA downstream 184381 9542118 ~ 9548305 (-) True G153539
TU207976 lncRNA downstream 372836 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 394820 9246355 ~ 9337866 (-) False LOC120574352
TU208072 lncRNA upstream 19064 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 46094 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 60897 9794092 ~ 9842982 (-) True G153597
TU208085 lncRNA upstream 174045 9907240 ~ 10016313 (-) True G153596
TU208092 lncRNA upstream 233387 9966582 ~ 10018859 (-) False G153596
XM_039824655.1 mRNA downstream 325882 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 387514 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 684563 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 695858 9020086 ~ 9036828 (-) False sez6l2
XM_039824129.1 mRNA upstream 328091 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 328091 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 328091 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 328091 10061286 ~ 10149481 (-) False cacna1aa
XM_039824125.1 mRNA upstream 328091 10061286 ~ 10149481 (-) False cacna1aa
TU208055 other downstream 1446 9730610 ~ 9731240 (-) True LOC120574633
unassigned_transcript_819 other downstream 1543 9730652 ~ 9731143 (-) False LOC120574633
TU208066 other downstream 10062 9722181 ~ 9722624 (-) True G153584
unassigned_transcript_818 other downstream 46638 9685396 ~ 9686048 (-) True LOC120574592
unassigned_transcript_817 other downstream 50922 9680832 ~ 9681764 (-) True LOC120574395
unassigned_transcript_821 other upstream 2431 9735626 ~ 9736834 (-) True LOC120574583
TU207919 other upstream 4775 9737970 ~ 9738487 (-) False LOC120574579
unassigned_transcript_828 other upstream 88950 9822145 ~ 9822993 (-) True LOC120574648
TU208206 other upstream 627606 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other upstream 627617 10360812 ~ 10390120 (-) False gtpbp1

Expression Profile