RNA id: XM_039825351.1


Basic Information

Item Value
RNA id XM_039825351.1
length 2993
RNA type mRNA
GC content 0.43
exon number 9
gene id ndel1b
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15366920 ~ 15404605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTCCTAAACACAGCTGAGCTCAGTCACTTAGTATCATCCGAGGCCGGGGCAGGGAAGAGGTGTGCGTGTTTGTTGGATGTAACGCCGGCTGGAAGGCGACCTCCTGAAACAGAAGATAGCTGGACACCGATTTGACATGAGCAGGGTGCCCTGACATGGACAAAGAGATGATTCCCAAATTCACGTCAAAGGATGAGGAAGTTGATTACTGGAAGTCCCAAGCCCTCAAATATAAGAAAAGTTGCTATGATGCCCAGGAGGAACTGCAGGAGTTCCAGGAAGGGAGCCGGGAGCTGGAAGCTGAGTTGGAGGCACAGCTTGGCCAGGCCGAACACCGCCTTCGAGACCTCCACATTGAAAACGAGAGACTGAAGAACGAGATGGCCAACCTCAAGGAGAAACTGGAGCATCAGTATGCCCAGAGCTACAAACAGGTTTCTATGCTAGAGGATGACCTGGGCCAGACACGCAGCATCAAGGAGCAGCTCCACAAATACGTCCGAGAGCTTGAGCAGGCCAACGATGACCTGGAGAGAGCCAAAAGGGCAACAATAGTGTCTCTTGAGGACTTTGAGGGCCGTTTAAACCAGGCCATTGAGAGAAATGCCTTCCTGGAAAGTGAGCTGGATGAGAAAGAGTCCCTTCTAGTATCTGTGCAGCGGCTGAAAGATGAAGCACGAGACCTGAGACAGGAGCTGGCAGTACGGGAGCGGACTACAGACAGGATGTCAGCACCCAGCTCACCCACCTCAGACATCGACAAGATGGATTCTGCAGTACAGGCTTCTTTATCCCTCCCAGCCACACCCGTAGGAAAGAGCATAGAGCACCCCTTCATCAGCTCAAAAGCATTGACCAATGGCTGTGGAAACTCATCCCTCACTCCTTCTGCTAGAATCTCAGCTCTTAATATTGTTGGCGATCTCCTGAGGAAAGTTGGGGCTTTGGAGTCCAAAATCGCCGCCTGTAGGAAGTTTGCCAAAGACCAGGCAGCAAGAAAAAATTACTCCACAGACAATGGCAAACTCCTCAACAGCAATGCCACAAAGTTCTCTcactctctacataccacttaCTTTGACAAAACGACTGTAAATGGATTGGACCCCAGTTCCTTGACGACATCCAGAGCCGTGTCTCCACCAGGCATGCTGCCTCTGAGTGTGTGAGGCGTCCCCACACCACCCAAACCTCTACTGAAACTCCTATCCACCCAACACAATGTGGGACCCGAGAGGACacttgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaagagtGATGTGGGTTTGCCTGTTTGGGATTGTGCATTTTTGAACGTGATGTGTTTAAGAGAGGCTTGAGTATACAATAAACTTGCCTCCAGTTTTCAGCTCTAAATGCATCTGTGAGTAGGTGCACGGTCATGTGTGCATTACGTTCCTACCACATACTTTGCATGTGCCTAAAGCTGTACTGTGCTCTCTAGATGTCAACTTTGAAGTGGCACCATTATATTCTTAGTTCCACTGTTCATCTGAAAACTACTATCCCTGACAAAAGGTCCTCAACAGACCACTACTTCCTCTTAACCTTCTTTTCTTCCTGTATTTTCACTTAAATTGCACAGTTAAACTTATTTCAATTTagaatgtattatattttaaaagGGATGTTTTCATATGAATTAATTTATTTCACAGtatgctttaaaatgcaatattTCCTATTTGCTATTTTCCTGCATGTGTGCATATGTAATGTGGGGTTGGAGAGTATGGTTGGACCCCATATTCATGACTGAAGTGAATGTTGATCGTTCAAAGCCATGTAGCCtcagtgcagtttttcctcttGTTACTGGCTACTTGCTGTAATTTGGAAGTAGTCACCATGTTAAAGCTGGCTCTGTCCTCGGAGGTTAAATCTGCACTTAAACAAACTACTCCTCACAGGTTTAGTTCTTCTCTGGGCATCCATTGAGATTTCGAGGTAACGTTTTTTTgccttctttttttatgtttaatgtatagatttttttgtttcttggGACAGGCTccttttacctttttctgataTGGTGGCAATTATCCACAGTGGATTCGTAATATTTTTACgaatttttaatatatttttatcaACTTTATTGACAATTCCACAATATGTGcccagacatacagagcaattaAAAATATGATTCTCTCTGACCCAATTTGGCTTTATAAAACTCACACAAAAGAATActcaaagcaaaataaaactgaCTCAAGGATCCTTTTTGAGACTGTCTGCTACCTTTTCCTGGTGTATGAATTAATGGTCCAGTGTGGCCTTTATGTCATGTAGCATATTTGCTGATTATCTGTAATTGTGTGAAGTTTATGTTAATTTGACTTAATTCTTGGATTTTTAGCAGGTTGGATATTGGCAATGCATTGATTTTACATGCCAGAGGTTTGACTAAATCCATTTTGCCCACATATTTCTCCCTATCATAGATCTTTGTGTCACCATCTTGAAGCATAATTTGAAGCCTTtagcattttatttctttttggaTCCTATGAGATGTCATTTTGGGCACTCTGAGCCTGTTACTGAAGCCTGTTCTCAGTCAGTGTATATAAGGATGGTAAATTTGCCTACCAAATTTGTACATACTTACATTTGACACTAAGGtcctatttatttcagattatATATGGCATGTTCAGATAATGAATGGTTAAAGCCATTGTATTATAATATCAAATTGTAATGTCAAAATTGTTTGAGTAAATAAAGATTGAGATGACAAATATGTTATGTAGTATGAAGCCTATACTGTAATTAAAGATGATACAGCACACAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210215 lncRNA upstream 221636 15173092 ~ 15173363 (+) True G155104
TU210178 lncRNA upstream 279551 15055351 ~ 15115448 (+) True G155077
TU210127 lncRNA upstream 391353 15001008 ~ 15003646 (+) True G155050
TU210110 lncRNA upstream 410254 14983350 ~ 14984745 (+) True si:dkey-282h22.5
TU210104 lncRNA upstream 423209 14971522 ~ 14971790 (+) True G155041
TU210301 lncRNA downstream 42279 15446884 ~ 15449558 (+) True G155180
TU210325 lncRNA downstream 102448 15507053 ~ 15508319 (+) True G155197
TU210353 lncRNA downstream 139637 15544242 ~ 15544549 (+) True G155212
TU210425 lncRNA downstream 256763 15661368 ~ 15731619 (+) False G155257
TU210429 lncRNA downstream 256763 15661368 ~ 15731619 (+) False G155257
XM_039824740.1 mRNA upstream 4469 15360766 ~ 15390530 (+) True arhgap44a
XM_039824742.1 mRNA upstream 4469 15373012 ~ 15390530 (+) False arhgap44a
XM_039826240.1 mRNA upstream 81428 15310845 ~ 15313571 (+) True LOC120575445
XM_039825521.1 mRNA upstream 101028 15280641 ~ 15293971 (+) True cdc42ep4a
XM_039825704.1 mRNA upstream 118039 15191858 ~ 15276960 (+) False sdk2a
XM_039826277.1 mRNA downstream 24213 15428818 ~ 15433287 (+) True atp5pd
XM_039823875.1 mRNA downstream 91082 15495687 ~ 15499506 (+) True znf750
XM_039823882.1 mRNA downstream 105488 15510093 ~ 15512426 (+) False arl16
XM_039823881.1 mRNA downstream 105544 15510149 ~ 15512426 (+) False arl16
XM_039823828.1 mRNA downstream 122249 15526854 ~ 15528470 (+) True rasd2
TU210192 other upstream 255293 15135791 ~ 15139706 (+) True G155088
unassigned_transcript_851 other upstream 402491 14992013 ~ 14992508 (+) True LOC120575440
unassigned_transcript_850 other upstream 408086 14985700 ~ 14986913 (+) True LOC120574428
TU210109 other upstream 411716 14981236 ~ 14983283 (+) False si:dkey-282h22.5
TU209715 other upstream 1540713 13847139 ~ 13854286 (+) True G154743
TU210329 other downstream 105620 15510225 ~ 15512810 (+) True arl16
TU210337 other downstream 123336 15527941 ~ 15528418 (+) False rasd2
TU210542 other downstream 482585 15887190 ~ 15891018 (+) True LOC120574525
XR_005641831.1 other downstream 1353040 16757645 ~ 16766745 (+) False raver1
XR_005641811.1 other downstream 2312134 17716739 ~ 17724229 (+) False rmi2

Expression Profile