RNA id: TU210325


Basic Information

Item Value
RNA id TU210325
length 1205
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G155197
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15507053 ~ 15508319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGAGGGGTGGAGAGTTCTTTATGATGATGAAAGTCTTACAGTCTGATTTATTACTCTTTTCATACCAGATACATAACAAATACAGCAGGTCAGGACAAACACTTTGGTTCATTCCAGGATTTATTGTTGGCTAAGCAGAGGATATTAAATATATAGGATTCATAAATGCAGCAacattttgtatgtgtatgtagtgTTTTAGTCTGCGTGACATCAATAGTTAGGCTATGGTGTAgataaaagtataaagtaatgCATTCACTGGGAAAATCCGATGTCATTTGCACAGCAGTACAATTCAGTCGGATGCTGGTTAAATGCAGGCAATGAAAATGTGTAAGGTTTTGATGCATACCAAAGCATACTCAGCTTCAGACCAATTTGTTCTTCTAACTGACAAGCAAGCCTGATAAAGAATATCCATAACACATTGCTTGCTCTTCCACATgcagaaaatgtttaaaaacaagttttaaGTTGGTCCAGACCTGAGGTTTTGGTTTGTGgtaagcctttttttttaaacagtattGCATGTTAAGGTTTATGTTTGTAGGCAACCTACACAGAAGTCAGTGTAGAAAATActgaatttaaatatatatatatatattcgttCAAACACAGAATTTCAGATAGTAACTGAAAGATGTGGATTTTGGAAGCAGGTTGGTGTAGGTAGAGCAGACAGGGTAGAAATATTTTGTTATGTTGATTCTGTATTGTCTACACAATATAACATACATTACAATGTTATAGTATTATGTTTAGTCTCTTCAACAATTAGCcatattattttggtcaattaaCATCTgtcaatatatacatatatttggtTTTAGTTTAAGATTGTTAAGCTTTCTACAAGTAAATGTGAGTGCAATTATTTCAGTAGGTTCTTCATAATACTTATTGAAGAGCCCCTGTAGCCACCACCAAAGTGGTTCCAGTGATTCAGATAGTGGAAGAGTTGGTAAAGCTGGTTTCTCTTTGCAAAGCCTGGTGCTTGAGGAATCTTGTCATGGTAAGCAGAGTAAAAAGAGCTGTTGAAGCCACCAAACATCCCTGCAATACCCAGCTCATACTCTGAATGGCCATAGAAGGAGGCTGGGTCAAAGATGACTGGGCCCATCGTACACTGTGCTACGTTGCCTCCCCATAGGTCTCCATGGAGGAGAGCAGGAACAATCTCTACATCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210301 lncRNA upstream 57495 15446884 ~ 15449558 (+) True G155180
TU210249 lncRNA upstream 102606 15366920 ~ 15404447 (+) False ndel1b
TU210215 lncRNA upstream 333690 15173092 ~ 15173363 (+) True G155104
TU210178 lncRNA upstream 391605 15055351 ~ 15115448 (+) True G155077
TU210127 lncRNA upstream 503407 15001008 ~ 15003646 (+) True G155050
TU210353 lncRNA downstream 35923 15544242 ~ 15544549 (+) True G155212
TU210425 lncRNA downstream 153049 15661368 ~ 15731619 (+) False G155257
TU210429 lncRNA downstream 153049 15661368 ~ 15731619 (+) False G155257
TU210424 lncRNA downstream 157140 15665459 ~ 15731815 (+) True G155257
TU210546 lncRNA downstream 382776 15891095 ~ 15891593 (+) False G155346
XM_039823875.1 mRNA upstream 7547 15495687 ~ 15499506 (+) True znf750
XM_039826277.1 mRNA upstream 73766 15428818 ~ 15433287 (+) True atp5pd
XM_039825350.1 mRNA upstream 102448 15394999 ~ 15404605 (+) True ndel1b
XM_039825351.1 mRNA upstream 102448 15394999 ~ 15404605 (+) False ndel1b
XM_039824740.1 mRNA upstream 116523 15360766 ~ 15390530 (+) True arhgap44a
XM_039823882.1 mRNA downstream 1774 15510093 ~ 15512426 (+) False arl16
XM_039823881.1 mRNA downstream 1830 15510149 ~ 15512426 (+) False arl16
XM_039823828.1 mRNA downstream 18535 15526854 ~ 15528470 (+) True rasd2
XM_039825664.1 mRNA downstream 27373 15535692 ~ 15537840 (+) True LOC120575067
XM_039825662.1 mRNA downstream 29302 15537621 ~ 15541106 (+) True btr02
TU210192 other upstream 367347 15135791 ~ 15139706 (+) True G155088
unassigned_transcript_851 other upstream 514545 14992013 ~ 14992508 (+) True LOC120575440
unassigned_transcript_850 other upstream 520140 14985700 ~ 14986913 (+) True LOC120574428
TU210109 other upstream 523770 14981236 ~ 14983283 (+) False si:dkey-282h22.5
TU209715 other upstream 1652767 13847139 ~ 13854286 (+) True G154743
TU210329 other downstream 1906 15510225 ~ 15512810 (+) True arl16
TU210337 other downstream 19622 15527941 ~ 15528418 (+) False rasd2
TU210542 other downstream 378871 15887190 ~ 15891018 (+) True LOC120574525
XR_005641831.1 other downstream 1249326 16757645 ~ 16766745 (+) False raver1
XR_005641811.1 other downstream 2208420 17716739 ~ 17724229 (+) False rmi2

Expression Profile