RNA id: XM_039823882.1


Basic Information

Item Value
RNA id XM_039823882.1
length 1218
RNA type mRNA
GC content 0.41
exon number 5
gene id arl16
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15510093 ~ 15512810 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTAACAAGGGGAGAAACTTCCACTCTCTGGACAATtccggCTTAGCTTGCAAGGATCAGGTGAACTGGGGGAACCGTCTCTTACTCTACCTACAGTAGGAACCAACCTGACTGACCTGACActaaataagaagaagaaggttACATTAAGAGAGCTTGGAGGCTGCATGGGCCCTATATGGCCTAGTTACTTCAAAGACTGCGCCTCTGtcattTTCATGGTGGACTCAGCCAACATTGCTCAGATATCCTCCTCCTGTATCCAGCTGCTGTCAGTACTCTCTGCTGAGCCTCTGCACAGTGCCTCTGTTCTTATTCTGTTCAACAAGAGAGACATGCCTTGCACTATGAGTCTCATAGAGATAAAGTCGCTGTTCAGAATGGATGACATCATAGCATCTGCGACACAGCCAATCACATCACTGGAACTCAGTGCCCGCTCTGGACAGGGACTTCAGGAGGTGCTGAGCTGGCTGGAGTCCATCATAGTCAAGTGAACCATCATACATTTGTTCCTTATGAAGTGATGCTTCTCTCACAGGACTTTGAATGATGACTTCAAGCCTTTTGGCATGAGATGGCAGTATCCTCAGTGAGCAAAGAgtgtttacacacattttttaagaGCATTTAATGATGTGTTTAGTGTTGGCCCCACTGAAAAATTAGATATATTAGCTATGCCATGGCAGGATGGAATGATTGTATTGTTGACCATTGTAACATTTGTTAAATCAACACTACTGTAGGGTCTTGCCTTCAGTTAACAATTGTTTATACTGGTCACTTTTACAAATTCATCTCTGTACAGATGAATATTGAACTGCTGGGATTCATGACTGACTGTAGTTTGATTCTCATGCTACTCTAAGTAAGCACTAGTTTTGTTATATAACAAAATTAGCTATTGCAATTCAGTTTGAATTACCGGTTAAGTGTGACAAAATAGATTTGTCAGAGTAGTTATTGTAAGTGATGCAGCATAGTGGTAATAAGTCTCTACCAGCAGGGGGCATAAAGTGCACAACAGATACTGTAACTGGTACTGGGGTGTGCCTGGGTTGTGATGATTTCATataaatgtattgatatcacaggaaatgagaaaatacaaaacaataaaaccaactGAGGATGAAGCAATGTTCCAATTATACCCTTATATTTGATGAAAGTAATTGGTTCACAAGCAATGAATAAAACTCATGATTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210325 lncRNA upstream 1774 15507053 ~ 15508319 (+) True G155197
TU210301 lncRNA upstream 60535 15446884 ~ 15449558 (+) True G155180
TU210249 lncRNA upstream 105646 15366920 ~ 15404447 (+) False ndel1b
TU210215 lncRNA upstream 336730 15173092 ~ 15173363 (+) True G155104
TU210178 lncRNA upstream 394645 15055351 ~ 15115448 (+) True G155077
TU210353 lncRNA downstream 31816 15544242 ~ 15544549 (+) True G155212
TU210425 lncRNA downstream 148942 15661368 ~ 15731619 (+) False G155257
TU210429 lncRNA downstream 148942 15661368 ~ 15731619 (+) False G155257
TU210424 lncRNA downstream 153033 15665459 ~ 15731815 (+) True G155257
TU210546 lncRNA downstream 378669 15891095 ~ 15891593 (+) False G155346
XM_039823875.1 mRNA upstream 10587 15495687 ~ 15499506 (+) True znf750
XM_039826277.1 mRNA upstream 76806 15428818 ~ 15433287 (+) True atp5pd
XM_039825350.1 mRNA upstream 105488 15394999 ~ 15404605 (+) True ndel1b
XM_039825351.1 mRNA upstream 105488 15394999 ~ 15404605 (+) False ndel1b
XM_039824740.1 mRNA upstream 119563 15360766 ~ 15390530 (+) True arhgap44a
XM_039823828.1 mRNA downstream 14428 15526854 ~ 15528470 (+) True rasd2
XM_039825664.1 mRNA downstream 23266 15535692 ~ 15537840 (+) True LOC120575067
XM_039825662.1 mRNA downstream 25195 15537621 ~ 15541106 (+) True btr02
XM_039825661.1 mRNA downstream 25227 15537653 ~ 15541106 (+) False btr02
XM_039825660.1 mRNA downstream 26471 15538897 ~ 15541106 (+) False btr02
TU210192 other upstream 370387 15135791 ~ 15139706 (+) True G155088
unassigned_transcript_851 other upstream 517585 14992013 ~ 14992508 (+) True LOC120575440
unassigned_transcript_850 other upstream 523180 14985700 ~ 14986913 (+) True LOC120574428
TU210109 other upstream 526810 14981236 ~ 14983283 (+) False si:dkey-282h22.5
TU209715 other upstream 1655807 13847139 ~ 13854286 (+) True G154743
TU210337 other downstream 15515 15527941 ~ 15528418 (+) False rasd2
TU210542 other downstream 374764 15887190 ~ 15891018 (+) True LOC120574525
XR_005641831.1 other downstream 1245219 16757645 ~ 16766745 (+) False raver1
XR_005641811.1 other downstream 2204313 17716739 ~ 17724229 (+) False rmi2
TU211348 other downstream 2224553 17736979 ~ 17741048 (+) False pla2g10

Expression Profile