RNA id: TU214716


Basic Information

Item Value
RNA id TU214716
length 422
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G158377
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 26977701 ~ 26993922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTCTCTAAACCTGAAGGGGATGTTTGAGACATGAAGTCTCTTGGGCTGGGCCTTGCTGTCTGTGCTTTCAGGTAAGGTCTGTGTTGGTGGCTGAATGTCCGTCTGGGCTGCATCATCTGTCTGTGTGGCTGTGCCGGTGACCGTCTGACTGAGAGAGTCTGACCCGCTCTGCTCGCTGTGGCTCTGTGAGGACTGGTACATGTTGAGTGGATGCTCACTGACGGAGGCCTGGACCCCAGCGTAGTCCTGTGGTGCTGCTGGGTGCTGGTGTGGATGTGGGTGGGAGTGTGGATGTGGATGGGGGTGTGAAGCTGTGAACTCAGCTGGAATGCCGTTCTGGGGAGGGGGGGCAAACTGGGCTGATGGGTAAGCCTGGGCCATGGATGGGTCCGGGGGTGCCGGTGTGTCCTGGTTACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641937.1 lncRNA upstream 70039 26890989 ~ 26907662 (+) True LOC120574958
TU214710 lncRNA upstream 116110 26860152 ~ 26861591 (+) True G158371
XR_005641941.1 lncRNA upstream 270015 26704672 ~ 26707686 (+) True LOC120575007
TU214695 lncRNA upstream 292035 26681839 ~ 26685666 (+) True G158359
TU214586 lncRNA upstream 345393 26630600 ~ 26632308 (+) True G158296
TU214755 lncRNA downstream 405954 27399876 ~ 27400135 (+) False LOC120575279
TU214760 lncRNA downstream 417742 27411664 ~ 27413867 (+) True G158412
TU214772 lncRNA downstream 546478 27540400 ~ 27540732 (+) True G158420
TU214902 lncRNA downstream 769758 27763680 ~ 27763921 (+) True G158541
TU214909 lncRNA downstream 799840 27793762 ~ 27793974 (+) True G158548
XM_039825170.1 mRNA upstream 91399 26740037 ~ 26886302 (+) True jupb
XM_039825095.1 mRNA upstream 488012 26484137 ~ 26489689 (+) True LOC120574712
XM_039825097.1 mRNA upstream 495731 26475037 ~ 26481970 (+) True prl
XM_039825998.1 mRNA upstream 709199 26250843 ~ 26268502 (+) True LOC120575278
XM_039825039.1 mRNA upstream 751655 26202967 ~ 26226046 (+) False LOC120574687
XM_039825999.1 mRNA downstream 406213 27400135 ~ 27400968 (+) True LOC120575279
XM_039824315.1 mRNA downstream 444355 27438277 ~ 27538689 (+) False sept12
XM_039824316.1 mRNA downstream 444391 27438313 ~ 27538689 (+) True sept12
XM_039824318.1 mRNA downstream 498765 27492687 ~ 27538689 (+) False sept12
XM_039824317.1 mRNA downstream 502382 27496304 ~ 27538689 (+) False sept12
TU214580 other upstream 349665 26575639 ~ 26628036 (+) True G158291
TU214563 other upstream 507934 26455638 ~ 26469767 (+) True G158276
TU214388 other upstream 941537 26032304 ~ 26036164 (+) True G158184
TU214389 other upstream 942167 26032304 ~ 26035534 (+) False G158184
TU214145 other upstream 1641136 25330435 ~ 25336565 (+) False G158004
TU214866 other downstream 662975 27656897 ~ 27661623 (+) False smg1
TU214990 other downstream 1054590 28048512 ~ 28052449 (+) True G158612
TU215205 other downstream 1532913 28526835 ~ 28532630 (+) True G158767
TU215267 other downstream 1745935 28739857 ~ 28767588 (+) False rras
TU215266 other downstream 1760412 28754334 ~ 28767588 (+) False rras

Expression Profile