G158296 (nsf,LOC102297066,LOC101477540)


Basic Information

Item Value
gene id G158296
gene name nsf,LOC102297066,LOC101477540
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 26630600 ~ 26632308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU214586
CAATAATACAGCCACCAGTGGTGTGCGATCACTGTTCTTGGTCTGCTGTATCAGCAGCTCTCCATCGTCCAGGACGTGAGTGACTGGGTCACCCCATTTGATAATGCCGTTCATGATGTAGTTGGAGTAATCCTCCTGGTTTGTACCAAACGCAGGTTTTATGTCATTGTTGAGGGATCCCATGAAGTCACTCCTGGTGACCTGCAGCTTCTCTGCTCTCTCCATGTCCACTTCAACTGTAGATGTGGCCTTGATGTGTCGGTTCATGGCGGTGGACTGAGCAGCCCTGACCAGCCCCTCCAGCTCGGCACCGCTGTAGTTCTTAGTTTCGGCTGCCAGTTCCTTGATTTCGACATCGGGAGCGAGCAGGTTGAAGCTTCGCATCTTGTTGGTGTGGATGGTCAGGATCTGGACACGGCCCTTCTCATCGGGCAGACCTGGAGGTGAGATGACGAAGCAGCGAGGGACAGAGGAAGATGGGTGAAGAGAAAAGATGGACCGGGGGtatggaaaggaaaaaaaattgtgttgaGAGGTCGAGGGGAGAGAGGTTGCAGTTGAGTTGAAAGAATGGAAGGAGTAAGGAAAGAACGGAGGGACAAGGACAGTAAAAATCCG

Function

symbol description
nsf Enables PDZ domain binding activity and ionotropic glutamate receptor binding activity. Involved in intracellular protein transport; positive regulation of protein catabolic process; and positive regulation of receptor recycling. Located in Golgi apparatus; cytosol; and plasma membrane. Implicated in developmental and epileptic encephalopathy.

NR:

description
PREDICTED: vesicle-fusing ATPase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214586 True 618 lncRNA 0.52 3 26630600 26632308

Neighbor

gene id symbol gene type direction distance location
LOC120574712 LOC102077703,LOC102789758,LOC102295644,LOC101478841,LOC107104997 coding upstream 140911 26484137 ~ 26489689 (+)
prl LOC103358656 coding upstream 148630 26475037 ~ 26481970 (+)
LOC120575278 NA coding upstream 362098 26250843 ~ 26268502 (+)
LOC120574687 NA coding upstream 404554 26202967 ~ 26226046 (+)
syt5a LOC105920779,LOC103358649,LOC101481810,LOC102228091,LOC102207842 coding upstream 469445 26142535 ~ 26161155 (+)
jupb LOC103359554,LOC100701331,LOC102214474,LOC101475556 coding downstream 107729 26740037 ~ 26886302 (+)
sept12 LOC104934564 coding downstream 805969 27438277 ~ 27538689 (+)
hao1 hao1 coding downstream 1031945 27664253 ~ 27671058 (+)
LOC120575474 NA coding downstream 1129670 27761978 ~ 27774184 (+)
zgc:86896 LOC104927173,LOC107391795,LOC103363450,LOC103393532 coding downstream 1227515 27859823 ~ 27872407 (+)
G158292 NA non-coding upstream 21251 26604087 ~ 26609349 (+)
G158259 NA non-coding upstream 138288 26328191 ~ 26492312 (+)
G158245 NA non-coding upstream 286116 26340639 ~ 26344484 (+)
G158205 NA non-coding upstream 511054 26119104 ~ 26119546 (+)
G158204 NA non-coding upstream 511943 26117148 ~ 26118657 (+)
G158359 NA non-coding downstream 49531 26681839 ~ 26685666 (+)
LOC120575007 NA non-coding downstream 72364 26704672 ~ 26707686 (+)
G158371 NA non-coding downstream 227844 26860152 ~ 26861591 (+)
LOC120574958 NA non-coding downstream 258681 26890989 ~ 26907662 (+)
G158377 NA non-coding downstream 345393 26977701 ~ 26993922 (+)
G158291 nsf,LOC101477540,LOC102297066,LOC100697603 other upstream 2564 26575639 ~ 26628036 (+)
G158276 NA other upstream 160833 26455638 ~ 26469767 (+)
LOC120575027 NA other upstream 539592 26089652 ~ 26091008 (+)
G158184 NA other upstream 594436 26032304 ~ 26036164 (+)
zgc:158403 LOC103370216,LOC106932766 other upstream 1227548 25383364 ~ 25403052 (+)
LOC120575279 NA other downstream 767568 27399876 ~ 27400968 (+)
smg1 smg1 other downstream 969485 27601793 ~ 27661623 (+)
G158612 NA other downstream 1416204 28048512 ~ 28052449 (+)
G158767 gps1 other downstream 1894527 28526835 ~ 28532630 (+)
rras rras other downstream 2107360 28739668 ~ 28767614 (+)

Expression


Co-expression Network