RNA id: XM_039825170.1


Basic Information

Item Value
RNA id XM_039825170.1
length 4272
RNA type mRNA
GC content 0.49
exon number 17
gene id jupb
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 26740037 ~ 26886302 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATACTCTCCTCTCCTGTGACGCTGTAGCAGCCGAGCCGCTGCCGGTTCGCTCCCGTCCCTCTGCCCGGCTGGCTGCGTGCTGCACACCGTGTTAAACGGGAGACATATAGATACAGCGAGGGCACATAGGCGAAAAAAAACCATTAGCGGATCTGAACCTGAACTATACGGACTGTGGATTTAAGGAGAGGAACGACGGACAATTTGAAGCCGTGACTGCTGCGACAGGGAGCCGCTCCAGCCTACTGTCCAGTTAACAAGgtcagaggtcagtgaAGGCAGTGGTACCAGTTGGTGGAGATGATGTCCATGCAAATGAGTGAGGCGAACAGTGTGGTGAAGGTGGCGGAATGGCAGCAGACCTACTACGCCTCAGACTCTGGAATCCAATCAGGAGCCACCACAGTCCTGGATGATGAGAGCAGCACTGAGTACAGCGGCCGTAAAAAGTACAATGGTAGTACTACAACCAGTACTACCACTGCTTCTGCTACTGCCACCACtgggagagaaggagacaccGCAGCTGGTGGAATAGAGAGCCCCACGGATTTAGACGCTCAGTACTCTCTAACCCGTGCTCAGCGCGTCAGGGCCGCCATGTTCCCAGAGACCCTAGTGGAGGGGGAGGCAGCCATGCCCGTCCAATCAGATCCTTCACAGCAAAGTAATGTGCAACGACTTGCTGAGCCTTCCCAGCTGCTAAAGACGGCTATAGTCCACCTGATAAACTACCAGGACGATGCCGAGCTGGCCACTAGGGCAGTACCAGAGCTCACCAAGCTGCTAGGAGACGAAGATCCGGTTGTGGTGAACAAGGCAGCCATGATAGTCAACCAGCTGACACGTAAGGAGGCCAGTCGTCGGGTGCTGGTGCAGTCTTCGGCCATGGTGAGCGCTGTGGTGCGCGCCATGACAACTGCGGTTGACATGGAGACAGCCCGTTGTGCGGCCAGCGTGCTGCACAGCCTGTCGCACCAGAGGGAGGGACTGCTGGCCATATTCAAGTCTGGAGGGATACCTGCACTGGTGCGCATGCTAAGTTCACCGGTGGAATCAGTCTTATTTTATTCCATCACCACCCTCCACAACCTGCTGCTGCACCAAGAGGGGGCCAAAATGGCGGTGCGCCTTGCTGATGGCCTGCAGAGGATGGTTCCCTTGCTAAAAAAGAGCAACCCCAAGTTCCTGGCTATCACCACTGACTGTCTGCAGCTCCTGTCATATGGCAACCAGGAGAGCAAGCTGATCATCCTAGCCAATGGAGGCCCAGAGGGTCTGGTGTTCATCACGAGGAACTACAACTACGAGAAGCTCCTGTGGACCACCAGTCGCGTTCTTAAagtgctctctgtctgtcccagCAACAAGCCTGCGATAGTAGAGGCTGGTGGTATGCAGGCTTTGGGCCAACACCTTACAGGTTCTAGTCAGCGTCTGATCCAGAACTGTCTATGGACGCTCCGCAATCTGTCAGATGCTGCAACCAAACAAGAGGGATTAGATGGTCTGCTGCAGATATTGGTCACCCAGCTGGGCTCAGATGACGTCAACATGTTGACCTGTGCAACTGGCATCCTGTCAAACCTCACCTGTAATAACTCACGCAACAAGACTCTGGTGACTCAGTATGGCGGTGTGGAGGCGTTGATCCACGCCGTGCTTCGAGCTGGGGAAAAAGAGGATGTTGCTGAGCCGGCAGTCTGTGCCCTGCGTCACCTCACTTCTCGCCACCAGGACGCCGAGCTGGCCCAGAATGCTGTGCGGCTGCACTACGGTATCCCAGCTGTCGTCAAGTTGCTGGGGCAGCCGCACTACTGGCCTGTAGTAAAGGCTACGGTTGGTCTGATCCGGAACCTGGCGCTGTGCCCGGCCAATCAGGCGCCACTGAGGGAGGCAGGTGCTATTCCACGATTGGTCAACCTGCTGCTGAAGGCTCATCaggacacacaaagacacgccTCCTCAGCACAGCAAACATACCAGGATGGTGTCCGCATGGAGGAAATAGTAGAGGGCTGCACAGGAGCGCTTCACATTCTGGCGAGAGACCCCATAAACAGAGGAGAGATTGCTAGCATGCAGACCATTCCACTGTTTGTACAGctgcTGTACTCGTACGTGGAGAACGTGAAGCGAGTATCGGCGGGCGTCCTGTGCGAGCTGGCCCTGGACAAACAGTCTGCAGAGCTCATCGATGCAGAGGGAGCGTCAGCACCACTCATGGAGCTGCTGCACTCCAACAACGAGGGAATCGCCACGTACGCAGCAGCAGTGCTGTTCCGAATTTCGGAAGACAAGAGTTCAGACTACAGGAAGAGAGTGTCAGTGGagctcacacactcactcttcaAACATGACCCTGCGGCCTGGGAAATGGCCCATGCAGTTCCTTTGGAGCCTACATACCTAGCTGATGAGATAGATGGCTCTTACCCTCCCTATGGCTACGCTGATCTGTCTCTGGACAGCCTGCCGCTAGATCCTGACCTCCACGAGCCCTACATCCCCGACATGACCTATGACCCAAGACAAGTCTACCCTGAACCTCTCtaacaggaGATTAAAACAGAAATGCTGAAAGAAAACAAGAGCATGAACAAATCACAGGAAGAAAGACTGGAGGAATGGATGGAGGAAGAAGGAGATTGGAGTTTTTAATCACAAACGGAATCAGCCCTTTCCAacgggaggggaaaaaaaaattcccatTTGGCAATCAAGAACTATCAAAAGAGGTTGCTTATTAAAAAGAGGTTTATTGTTGCTGTAAATGAAATATGTAACTTTGTTATAATGTTTTACTGTGGGGtggaagtgtgtgtgggggcggGGGGTGTCTGAAGATTTGAGACATTGTTACACGGGTAACCTTTTGAAGCAATCAAACTAGGCAAGAATGCATTACAGTTTGGGACGTGTGGAGCAAATATAGGAGGGGCTTAACCAAACTTAGCTGGTAATGCTTACCAAATGTTTTAGCATTTTATCTGTACAGGAGCTACTAGTTAGAGAGAATTTGAATTTGCTGAAATATTACGACATCAATGTTAAAGTGGGATGTCAGTGATGCAATGCCTGTTGTAACATTAGCTGTGACATACAGATAATATTTTTCTCACATGTTGATACCTCATGGGAAACACCCATATTAGTCAGTAAGAAGTTCCATTACATTATAGTTAACTATAGCCCCCAGTTTAACCAAATGTTTTATTGACATCACTAAAACACTCACTATGATAACTATTCACAACTCTGAGATTTTTTCTTGCAAAACCTGCAGCATTTTACAGAATAGATTTTGTCCCTGATTGGCATTACTGCCTATCACCATTGCTACCAAATGTTACCCATGTATCCCAGCCTTTGGCTGCTGTCTTTTAGATGTCTCCACTGTGTATTTGATGGTGCACATGTCCCAGGGTGTCCATGTGTGGTTGTTGCATGGTAGTATCGTGTACTCATGGAAATATTCTTTACCTTTACATACTGAGAAAAATAGATATCCGGGTTGTACAAGCCACTTTGGATTACGCCGGCCATTTGGAAAACCTCAGTGAGGAACAGGACTACAAATCCCACCATGTCACAGCCTCACTTTCATCAAGTGGATATTCTGTTCAAATGGCCATAGGAAATGGACTACAAATCATCTTGGCATCTTCGGCATCAGACTACACAGCCCATCATTTTTCAGTAATACCCAGTTGGACCAACACCTCCACTGGAAATGGACCGCAGCTCTTTGATCAGTTTGTACACACCTTTGTGGGTGCCATGTAGTACACTGCAGAGTAAATTTACAACTTGCACCTTGCTTACACAAACATTATGACATGGCTTTTGTACTACTGTGGGCGGATCATAGAAATTTGTTGATAACTGTATGTCACTGGTCACTGTCAATAGAGGAGTAGGGGGTGCAACCTCTAATACAACATAATACGTGCTGCTGCTCACAGCATGTGTTAAGATTCAGTCATTGATTAGTATGCAGCACCTTTTCTATCTAACCATCACATCATATTGCAGTCTACATGGTCTGCATTTAAGTTGCTGCAGTTGGAATGTGGACATCATGGCACCAGGGGGAAATGTACTTGCACAGTACAAGGCTGCTGTTGTCGGTTGCAATACGAACAACAACCGCGTTAGCCTGCAATGTTAAGAAAGCACAACTACAATGACTAATCAACTGCTAAGGCAATCTACCACAGCTATACTGTTCCTGAATCTGAACATCATTAAATTTTGTTATTTTCAACTG

Function

GO: NA

KEGG:

id description
K10056 JUP; junction plakoglobin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641941.1 lncRNA upstream 32351 26704672 ~ 26707686 (+) True LOC120575007
TU214695 lncRNA upstream 54371 26681839 ~ 26685666 (+) True G158359
TU214586 lncRNA upstream 107729 26630600 ~ 26632308 (+) True G158296
TU214581 lncRNA upstream 130688 26604087 ~ 26609349 (+) True G158292
TU214542 lncRNA upstream 247725 26328191 ~ 26492312 (+) True G158259
XR_005641937.1 lncRNA downstream 4687 26890989 ~ 26907662 (+) True LOC120574958
TU214716 lncRNA downstream 91399 26977701 ~ 26993922 (+) True G158377
TU214755 lncRNA downstream 513574 27399876 ~ 27400135 (+) False LOC120575279
TU214760 lncRNA downstream 525362 27411664 ~ 27413867 (+) True G158412
TU214772 lncRNA downstream 654098 27540400 ~ 27540732 (+) True G158420
XM_039825095.1 mRNA upstream 250348 26484137 ~ 26489689 (+) True LOC120574712
XM_039825097.1 mRNA upstream 258067 26475037 ~ 26481970 (+) True prl
XM_039825998.1 mRNA upstream 471535 26250843 ~ 26268502 (+) True LOC120575278
XM_039825038.1 mRNA upstream 513991 26202967 ~ 26226046 (+) True LOC120574687
XM_039825999.1 mRNA downstream 513833 27400135 ~ 27400968 (+) True LOC120575279
XM_039824315.1 mRNA downstream 551975 27438277 ~ 27538689 (+) False sept12
XM_039824316.1 mRNA downstream 552011 27438313 ~ 27538689 (+) True sept12
XM_039824318.1 mRNA downstream 606385 27492687 ~ 27538689 (+) False sept12
XM_039824317.1 mRNA downstream 610002 27496304 ~ 27538689 (+) False sept12
TU214580 other upstream 112001 26575639 ~ 26628036 (+) True G158291
TU214563 other upstream 270270 26455638 ~ 26469767 (+) True G158276
TU214388 other upstream 703873 26032304 ~ 26036164 (+) True G158184
TU214389 other upstream 704503 26032304 ~ 26035534 (+) False G158184
TU214145 other upstream 1403472 25330435 ~ 25336565 (+) False G158004
TU214866 other downstream 770595 27656897 ~ 27661623 (+) False smg1
TU214990 other downstream 1162210 28048512 ~ 28052449 (+) True G158612
TU215205 other downstream 1640533 28526835 ~ 28532630 (+) True G158767
TU215267 other downstream 1853555 28739857 ~ 28767588 (+) False rras
TU215266 other downstream 1868032 28754334 ~ 28767588 (+) False rras

Expression Profile