RNA id: TCONS_00069956


Basic Information

Item Value
RNA id TCONS_00069956
length 1692
RNA type mRNA
GC content 0.49
exon number 20
gene id XLOC_035672
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23916647 ~ 24076844 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATAAACTGGAGGACATGGCCTCAGTTTGCGAGTTCGACCCAATCACGGGGAATATTCCCGCCACTAAAGTGGAGATCACCGTCTCGTGCAGAAACCTGTTAGATCGTGACACATTCTCCAAGTCGGATCCTTTGTGTATTCTATATACTCAGGGAGCAGAGTCTAAGCAGTGGCGTGAGTTTGGGAGAACTGAAGTCATCGACAACACCCTGAACCCAGACTTTGTGAGAAAGTACATCTTGGACTATTTCTTTGAGGAGAAGCAGAATCTGCGCTTTGACATATATGACATTGACTCCAAAAGTCCGGATTTGGCCAAACACGACTTCTTGGGTCAGACCTTCTGCACTCTGGGTGAGATAGTGGGTTCACCAGGCAGTCGTCTGGAAAAGCCTCTGGGTGGCATCCCTGGGAAGAACTGCGGTACCATTATTCTCACTGCAGAGGAACTTGGAAACTGTCGGGACTGTGCCACAATGCAGTTCTGTGCCAATAAGCTGGATAAGAAAGACTTTTTCGGCCGCTCTGACCCGTTCATGGTGTTCTACAGAAGTAATGAGGACGGAACGTTCACTATCTGCCATAAAACGGAGGTGGTGAAGAACACACTGAACCCCATCTGGCAGCCGTTCACCATTCCTGTCAGAGCGCTCTGCAATGGAGATTATGACAGGTCAATTAAAGTGGAGGTGTATGACTGGGACAGAGATGGCAGtcaTGATTTTATCGGGGAATTCACCACAAGCTACAGAGAGCTGTCTCGTGGTCAGAGTCAGTTCAATGTGTACGAGGTGGTGAATcctaaaaagaaactcaaaaagagaCGATACATCAACTCTGGCACAGTGACACTGCTTTCCTTCTTGGTGGAGGCTGAACACACATTCCTGGACTACATCAAAGCAGGGCTTCAGATCCATTTCACAGTGGCCATTGATTTCACTGCGTCCAATGGGAATCCTTCTCAGTCTACCTCCCTGCACTACATGAACCCATATCAGATGAACGCGTACGCCATGGCCTTAAAGGCCGTCGGTGAGATCATTCAGGACTACGACAGTGATAAGATGTTTCCTGCGTTGGGCTTTGGAGCCAAACTTCCTCCCGATGGCCGGGTTTCCCATGAATTTCCCCTGAATGGCAATGTTGATAACCCGTATTGCAATGGGATGGAGGGAATCCTAGAGGCTTATCACGAGAGCCTGAAGACTGTCCAGCTTTATGGACCCACCAATTTTGCTCCTGTCATCAACCATGTAGCGAGgtaTGCGGCAGCGGTTCAAGATGGCTCGCAGTATTTTGTGCTTCTCATCATCACAGATGGTGTGATTTCAGATATGGCTCAGACTAAGGAAGCCATCGTCAATgcAGCAAAACTCCCCATGTCCATCATTATTGTAGGAGTTGGACAGGCTGAGTTTGATGCCATGGTCGAGCTGGATGGAGATGATGTGAGAATATCCTCCAGAGGAAAGCTGGCAGAGCGGGATATTGTACAgTTTGTACCATTCAGAGACTATATGGACAGGACAGGAAACCATGTCCTCAGCATGGCACGGCTTGCCAAGGACGTCCTGGCTGAAATCCCGGATCAGTTAATCTTATACATGAAGTCAAGGGGCATCAAGCCCAACCAGACCCCGCCAGAGTACAGTCCACCTGGGCTCAGCCCGACTTCCACCATATGA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-9 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE5 (copine 5).

Ensembl:

ensembl_id ENSDART00000143152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071930 lncRNA upstream 9274 23898723 ~ 23907373 (+) True XLOC_035671
TCONS_00069954 lncRNA upstream 68124 23836129 ~ 23848523 (+) True XLOC_035669
TCONS_00069943 lncRNA upstream 175837 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069930 lncRNA upstream 260820 23653147 ~ 23655827 (+) True XLOC_035660
TCONS_00072198 lncRNA upstream 443781 23462818 ~ 23472866 (+) True XLOC_035657
TCONS_00069961 lncRNA downstream 206751 24283595 ~ 24291601 (+) True XLOC_035676
TCONS_00069974 lncRNA downstream 249182 24326026 ~ 24329469 (+) True XLOC_035677
TCONS_00071931 lncRNA downstream 271637 24348481 ~ 24350244 (+) True XLOC_035678
TCONS_00072199 lncRNA downstream 341025 24417869 ~ 24692136 (+) True XLOC_035679
TCONS_00071932 lncRNA downstream 504026 24580870 ~ 24588948 (+) True XLOC_035680
TCONS_00069955 mRNA upstream 37252 23861461 ~ 23879395 (+) True XLOC_035670
TCONS_00069953 mRNA upstream 55928 23827571 ~ 23860719 (+) False XLOC_035669
TCONS_00069952 mRNA upstream 56890 23826985 ~ 23859757 (+) False XLOC_035669
TCONS_00069951 mRNA upstream 90563 23809843 ~ 23826084 (+) True XLOC_035668
TCONS_00069950 mRNA upstream 106961 23802384 ~ 23809686 (+) True XLOC_035667
TCONS_00069959 mRNA downstream 33201 24110045 ~ 24151252 (+) True XLOC_035675
TCONS_00069960 mRNA downstream 204668 24281512 ~ 24295947 (+) False XLOC_035676
TCONS_00069962 mRNA downstream 219795 24296639 ~ 24325903 (+) False XLOC_035677
TCONS_00069963 mRNA downstream 222477 24299321 ~ 24325355 (+) False XLOC_035677
TCONS_00069964 mRNA downstream 222477 24299321 ~ 24329925 (+) False XLOC_035677
TCONS_00069946 other upstream 135253 23781005 ~ 23781394 (+) True XLOC_035666
TCONS_00069944 other upstream 173671 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069942 other upstream 175837 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069918 other upstream 528502 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069909 other upstream 573649 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069972 other downstream 240751 24317595 ~ 24323347 (+) False XLOC_035677
TCONS_00069973 other downstream 248505 24325349 ~ 24331270 (+) False XLOC_035677
TCONS_00069975 other downstream 629707 24706551 ~ 24711139 (+) True XLOC_035682
TCONS_00069976 other downstream 640158 24717002 ~ 24721472 (+) False XLOC_035683
TCONS_00069977 other downstream 653276 24730120 ~ 24743864 (+) False XLOC_035684

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_02204385_02277956.mRNA True 4778 mRNA 0.41 25 CI01000052 2202354 ~ 2278513 (-)