RNA id: TCONS_00069957


Basic Information

Item Value
RNA id TCONS_00069957
length 1526
RNA type processed_transcript
GC content 0.39
exon number 4
gene id XLOC_035673
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23917588 ~ 23920716 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGTCTTTATGGATGcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcttatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacatttttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttaacgtactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggCATCAAGAACACGTAGATAGCCTAAacctgtgtcagcctggacagactgcagttctgctactccacgccaaggcttttgtatggatgtctgactactacagtgttctctaaaggttttctggaagctccatttgagggcatcaaagacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcgtttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctctgccacaacaggtcatggtgtgtgcttactgctcgtagtaaacacacacactgatctgatgcgggagagatatatgcaaaaatatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatctggacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataatggaataacaaattgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139301

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071930 lncRNA upstream 10215 23898723 ~ 23907373 (+) True XLOC_035671
TCONS_00069954 lncRNA upstream 69065 23836129 ~ 23848523 (+) True XLOC_035669
TCONS_00069943 lncRNA upstream 176778 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069930 lncRNA upstream 261761 23653147 ~ 23655827 (+) True XLOC_035660
TCONS_00072198 lncRNA upstream 444722 23462818 ~ 23472866 (+) True XLOC_035657
TCONS_00069961 lncRNA downstream 362879 24283595 ~ 24291601 (+) True XLOC_035676
TCONS_00069974 lncRNA downstream 405310 24326026 ~ 24329469 (+) True XLOC_035677
TCONS_00071931 lncRNA downstream 427765 24348481 ~ 24350244 (+) True XLOC_035678
TCONS_00072199 lncRNA downstream 497153 24417869 ~ 24692136 (+) True XLOC_035679
TCONS_00071932 lncRNA downstream 660154 24580870 ~ 24588948 (+) True XLOC_035680
TCONS_00069955 mRNA upstream 38193 23861461 ~ 23879395 (+) True XLOC_035670
TCONS_00069953 mRNA upstream 56869 23827571 ~ 23860719 (+) False XLOC_035669
TCONS_00069952 mRNA upstream 57831 23826985 ~ 23859757 (+) False XLOC_035669
TCONS_00069951 mRNA upstream 91504 23809843 ~ 23826084 (+) True XLOC_035668
TCONS_00069950 mRNA upstream 107902 23802384 ~ 23809686 (+) True XLOC_035667
TCONS_00069959 mRNA downstream 189329 24110045 ~ 24151252 (+) True XLOC_035675
TCONS_00069960 mRNA downstream 360796 24281512 ~ 24295947 (+) False XLOC_035676
TCONS_00069962 mRNA downstream 375923 24296639 ~ 24325903 (+) False XLOC_035677
TCONS_00069963 mRNA downstream 378605 24299321 ~ 24325355 (+) False XLOC_035677
TCONS_00069964 mRNA downstream 378605 24299321 ~ 24329925 (+) False XLOC_035677
TCONS_00069946 other upstream 136194 23781005 ~ 23781394 (+) True XLOC_035666
TCONS_00069944 other upstream 174612 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069942 other upstream 176778 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069918 other upstream 529443 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069909 other upstream 574590 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069958 other downstream 143494 24064210 ~ 24064295 (+) True XLOC_035674
TCONS_00069972 other downstream 396879 24317595 ~ 24323347 (+) False XLOC_035677
TCONS_00069973 other downstream 404633 24325349 ~ 24331270 (+) False XLOC_035677
TCONS_00069975 other downstream 785835 24706551 ~ 24711139 (+) True XLOC_035682
TCONS_00069976 other downstream 796286 24717002 ~ 24721472 (+) False XLOC_035683

Expression Profile

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