RNA id: XM_039824639.1


Basic Information

Item Value
RNA id XM_039824639.1
length 9165
RNA type mRNA
GC content 0.60
exon number 29
gene id tnrc18
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5661861 ~ 5717548 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGATGGCAGAGATTTTGGACCTCCCCGATCCGTCCACGTACCACCTCCGTTGTTGGCGGGACTCGCAATGGAGTCTCACCGACtcggagcagcagcagcagccaggagGATCCCTCCCTCGCCCGGTCACTTGGGTGCGAGTCATCCGCCGCCTCTCCACTCCGGGAAATTCTTGCCATCGGCCATTAACCTACATCCACACCACAGCGATGCCTACGCAACAGGCTCCAGTCCCTTCCTGTCAGGTTATCCTGGCCACTCCCCCTTGACCTCTGAACCTGCGTACAGATCGGCCAATCCCAGCGGTCTGCAGATGGCTCAGCTCTGGGCATCACACGCTCACGAAGGCTACCCTCCTCTGCCAAGCAGCCTGTACTCCAGCCCCTACCTGTCCCTGGGGCACCTggattctccctcgctctcccaGCACCCTCTCTACGACTCGCATAAAGAGGGCTTTTACCTGCCAGCCTCCTTGAGCCAGTTGCCTCTCCACCCTCCGTCTGCTCCTCCGACCGTCCCGTCCAGCTCCACGCCCCCCCAGAGGACGTCCCGAGATGGGGGTCGGGACCGGCCTTAccggggagagagggagagagagcggtcAAGAGAGGAGCAGAGGCCGCACAGTGTGGTGGACCTGACGCAGGACGGGAGGAGCGTGGAGGACCGCAGGGCGAGGAGCGGCGACCGGGAacgagagaaagaaagggaccGGGACACGGAGAGAGACCGAGATAGTTGGCCCTTCCACCctcaccaccagcagcagcagcagcagaagtcACACTCCCAGCCTTCCACAGTGGAGCCCAGATCCAGGCGGTCACCTCCACAGCACTCCTTCCCTTCGGGTGGGGGTGGGAGGTTTCATGGACCAGAGATGGACAGAGGGGGTCCGGACGAAGAGGGGGCCTCTCGACCCCACCATAACCATAACTCTAACGCTAACTCGAATAACTCAAACTCCCACTCAGACAGACAAAGGAGGAATGACTCTGTAGCTACGTCAGCTGGGACCCTCCACATCTCCTACGCCCTTCCTCCAGCGTTTCAGCCCTCCGGCGCTGGCCCGCCCCaaccctccacacccagagagTCCACGAGAGAGCAGCGAGTCAGCGCACCGACATATGTGCCTTCTGTGGAGGTTTACGATGAGCGGGTCGGGCCCATCCAGATTGCCTCGCAGGCCCGCGACAACAAACACggtgacaaacacagagacagagagagggaacgagacagagagcgagacagagacCGTGAACGGGAGAGAAACCTGGAGAGGGAGAGCTACAGGTTTCCTGAGAGGAGCCCGATGGAGCATCCTCGACTCTCCCAGTCTGGCGATTCAGGCAATCAGAGAGAGGAAGGTTCGGTCATTTGTTCAAACGGTTCCATCGGTAAACGAGGTCAGGACGTGTCTTACTCCTCCAGTCAATCAAGGTTCAGCCCGGAAACCAGGGACATCTCTAAACACTCAATCCAAGTGGGCATAGAGCGGGCAGGGGCGGAGCCTAAGTGGAATACCATCAGCCCTTTAGCCAACTATGCCACGAGTCACATGGCTGCCCTAGCAGCCCAACACGGACACACGCTCGCCTCCCCCCACAGCCAGCCGACACATGCACAAATGCCCCATTCCCCTCACACAACTCATCGGCCCAGCAACAACCCACACTCCGCCCACAGCCATTCCCCGCAGAATCACCCCTCCCAACACGGACACGGGCGTGCAGTTGAGGAGGGGAGTCAGAGACGCTACCTGGACCCATCGGCGCTCTACCGACCTGGGGGGTCATTGGCAGGAGAGCGGGGTGGGTCATCAGGGTCGGATCCCACAGAGGTTTCAGCCATGCAGAGTCTGATTAAATACAGTGGGAACTTTGCTGCTGAAGGTCCGGGTTCCTCTAGGAACGCTGCGGATGGCAGAGGGCCCTTTGGGGGTCTGGCTCACGTTGGTATGGAAGccgagagggagagggagagggagaaagaaagagagagggaaaaagatAGAGAGcgggaaagggagagagacagggaaagGGTATCGGTTGGATCTGGTGGTTCAGGGGCGTTGAGAATGCCTCCCCAGCTGAAGAGAGAGCAGGAGCGGCCGGACAGCGCCCGCTCGTTTGGCCGGGAGGCGGAGGGGGAGGTGCGCCACCCTCCGGTTGGCATCGCTGTGGCTGTGGCCCGGCAAAGAGACAGTGGAAGCACCAGTAAACAGACCAGTGGACcctcagacacacagagaacccTGCTGCAAACAGTTATTAAAGATGAGGAGCGAGGGGAGGAGCGGGGTCGTCACCATGACGACCGTCTGCTGGCTGGCAGGCTGGAGCGCGAGCAGGAGAAAGTGCTCAGAGAGTCCAAGGAGCTGGCAGAGTTTACGCAGATGCACCCTACCCCGCTGTCTAGCAGCTTGACACCCAGCCTCATGACCCCCAACCTTATGGTGACAGGAGGGGCGGGACGATGGCCTCCCGACCCCTCAACTCTGACCTCTCACCCCTGGATGCCCCGACCTGGAGCCCCCCCAGTTTGGCTCTCCAGCTCCCCATACAGCCTGGGTCCTTCCTCACTCCACCAGACCCTCCCCCCAGGCTACCCACAGTCTCTGCCAGGCTCCATACCCCATCCATACCAGTTTGCCAGAGACCCACAGTCTGGACAGCTAATAGTCATCCCCACTGAACACCTGCCACACTACGGAGGTGACGTGCTGGAGCGCGGAGCCCCGGTGTGGTCGGGGGTGTACGGTACAGGCAGCTCGCTGCAGCACGCAGCCCAGCTCCAGCTCCTCTCCCAGCAGCAGATGCTCCGGCAACAGGAGCTGCTCATGATCCAGCAGCACACAGCGCAGGTCCTGGAGCTGCAGAGGAACGCACAGCTCGTCGAGCGTTTAAAGGCCAGCGAACACCGGCCGGAGATGCAAGACAAAGCAGACAAGCGAAACGCCCACCCCAAACCCCGCCCCTCCTCAGTatcttctccttctccctcacCCATCCTGCACCCCCGCAaacctccccctccctctcgcACGCCAACTCCGTGTACTTCCTCCCTCACCCCGCTGCCTCCGCTCCCCTCCCCGGTGACCACCCTCAAGTCAGAGGAAGGTGGGCAGAGAGCGTTGTCTCACCCGCCCACGCCCCTGCCTCACCCGCCTTCCCCCTGCTCAGCCTCTCCGCCCCCGTCTTCACCGCGGCGGCCTAAACTAGAGgcggccgaggagggggagatGGGACGGAGGGGGCAGAGAGAAGGACAGAAGCCGACCTCTGCGCCCTTTCAAGGCATCTACTCTGATCTCCCTCCTGGTTACCCTTACCAGTCAATCACTGCCCCATTTGGCTCACCTTTCCCCCCTTATCACATCCCAGCACCCACAGTGGCAAACACCGAAGTAGTCCCACCTCACCGCTCCCGCTCTCCTGCCTCTCCTGCCTCTCCTGCCCCTTCGCCCTCAGCACACCTCCATTCAAGGCTGCTGGAAGCCAGCATCAAGCCACAGAAACTAGAGCCGTCAAAGACAGGATCTTTTCTCAAGCAGGAACCAGGTCTGGAGCAGCCTGCACTTGACATGACGACAGAACCTCTGGGTCCCGTTCGCCGGAGCTGCAGCCCTGTGCTTGCCAGccaggacagagaggaagacGGGGAAGTCCCGAAGCCCCAGCCTCGACCGCTACCTCTGCTTGTCCCCAGCCCTCCACCGCTACAGGGTGAAAGAGGGGAAGAAGTCAGGGAGGAAGACCAGGAAGGGGGGCAAATCAAAATGGAGGTGTCATCTTACTCCTGTCAGGCAGCATATGCCCTGCCTCCTCCACTCACAGAGACTGAGCCTAAACCCGAGGTCATGAAGGATCCCGAATGGTATCCACCGTGCATCGTTGCAGATTCAGACAGCCAGGAGTCGGCTCCGATGCGCGCGTCACTAGAACAAATCGCCAGCGCAGCGTGTGAACAAGAACAGCCGGACACTCCGATCAACTCGCACAGTCCCAGTCAGAAAGAAAGTGTCACTGAAGCTCCTGCTTTTCCTCCTCCCACCTCCAACTCGCCCCTCCCGCTGGTCATCGGTCCTGAGGATCCCATGGCGGGGATGTTCGCTCTGCTGGCAGCCAGTGAGATGGCCCAGGCCCGCCCGAGCACCCCACCCGCCCCGACGCTTACGCTGCATACAGAAAACCCTCCCGTGGGTGCAGACTGCAGCAGCGCCGGGGCTCTGGAGATGGTGGCGCTGGAGGGGATGGCCCTGCTTAGCCAAATGGCCCAGCGAGAGATGGAGCACATCAGCATGGAGCAAGATCTGACATTAGAGGGTCTGGACTGTCTTCTTGAAGCAAGCAGACAGATTTTGTTGGAGGCCATCGAGAAACAGTCCCACATCGATCTGCCCAGAACGCTGGACCCCACCAAGAAGTACAGCTGGAGGCAGAGGAAGGAAGAGCCGCTGTACAGTAAAATGTCCCTGGACGTGTTGGACGCGGTGGAAGTGGAGTACCGTGTCCACCTGGCCGAGCTGCAGAAGACGTATAAGGAGAAGCAGAGAGATTTGAGCAAGCTGCAGAGACGCAGAGACAAGCGTGagcggcagcagcaggaggacgAGAGGCGGAGTCTGACCAGACGGGGCAGAGGACGACCCAGGAAGAGGAAACACTTGGCTACACCTCCCAAACTGGACTGCAGGCCTGGAAAGGTGGGTAGGACAGTGCAATACTCTGAGGACTCTGAAGCTGGGGAGGGACAGAGGAAGCGGTTTCGGGTGTCCAGAGAAGACGAGGAGACGGAGGCAGGAAGTGGAGGAGGAAAggtgaaaaagaagaaaaagaagaagaagagctggAATGACCAGGAGCCGTCCACCAGTCATGCTCTGGAGgtgttGAAGGCGAAGCGCGGCCATGTGTGTGAGCAGGAGCAGCTGGCGTCGGACCTCGACCGAGCGCTTTCGCTGACGCAGCTCGGCGCATCGCGCAAACTCACCTCCAACTCCACATCAGACAAGTCGAAGGGCAAGTCTGCGGAAAGTCGGACGAAGGAGCGCAGCGTCCACCCATCCGCCAAAACGGGGAAACCCAAGATGCCCGCCAAGGCTTCTGCTTCGGAGACCGTCCGAAAAGTGAAAGGTCAGAAGAAGATCACTTTGTTCTCTACCATGAGATCAGAGCTCAGCAGCGGCTCAAACAACTCCGATTCAGAGGAGCACAATTCTGCTCGAGGGGGCTGGCCCTCTCTCTCAGGGACGCGTTCCCACGGCGACCTGGCCACGAAGGGGCAGTCCGCATCCTCGCCGACGTCCCTGCTGTCCAGCGAGAAGCCTCCGAAGAAGAAACACAAGCACTTATCCCTGCTGCTGGAGGAAGCGGGCCTCAGCTCCTCCGACGACTCCTTCGACCAAGAAACCTCCGAGGACGACTACGAGAACGAGTCCGATTCGGACGACGATGGCGGCTGTGAGGAGAGCGGACTGGGTCTGCTGGCCAGGTTTGCGGCGAGCGCGCTCCCCGTCAGCTCCACCCCATTGAGCCTTGTCCATGATGAACGCCGCAGCAGgcaaagcactctggGGTCATCAGAGTGTGAGTGGTCAGACTCTGGCTCGGACATACGACTCAGGAAGTTCCCCTCTCTGCTGCACGGCAAACGCTCCGCCCCAGAGCTCCCCCTGTTGCCCCCGGCAACCCGCCGCATCGACCAGACCAGCCCCTCAAAGCGAGATGACTCTCTGCCAGTCAAACGCAAGCCTCTGCCCAAGCCGCGGCCCACGCCCCGGTCGCCGCGATCGTTCAGCTTCGACCTCCCCTCCGCCTCCGCCTGCGGGTTCGGAGGCTTCAGCGAGGACGAGGGCTGGACGCGGCGACGCAGCGAGAGGATCTTCCTCCACGATGCCACCACCTCAGCCAGTCCGATGCCCGCGTCGGCCTCCGCTTCCACCAGTCAgagctcctcctccagctcagcCCCACCTCTGACCCCGAAGCCAGCCTCCAGACCCAAAGCCTCTCCGCCcagcagagaggggaaagaTGTGGTCAAAAAAAAGAAGCTGAAGGACTCTCCTCTGCCCGTGAGCCCGTCCACTCTGTGCAGTCCAATCACCGGCACCCCTGCGCCCCTGAGCCTCAGCCCGGCTCGCAAGAGCCAACAAAAAGCCAAGACCAAGGCCAGAGAGccttCCAGAGGAGCAGTGAGCCGGCTGATGGAGAGCATGGCGGCAGATGAAGACTTTGAGCCCAACCAGGACAGCAGCTTCAGCGAAGACGAACTCGTCCCAACGCGCAGCAACAGCGTATCGGAGAGGTCCTCCACACCTGCTCCAGTGCAGTGTGTGTTGGATAAGGATTCTCTGGTGGACGGACTCAGAGTTTTGATCCCGATGGACGACCAGCTATTGTACGCAGGACATGTGAACACTGTACACTCCCCTGACATATACAGTGTGGTggtggagggggagagagggaacCGACCACACATCTACTGCTTAGAACAACTGCTGCAGGAGGCTATCATCGATGTGAAGCCTCCGTCCGTGCGCTACCTCCCAGAGGGCACCCGCATCGCTGCCTACTGGAGCCAGCAGTACCGCTGCCTGTACCCCGGCACTGTTGTCAACGGAAGTTCAGATATTGACGAGAATGATGATCTCATCACCGTGGAGTTCGACGATGGCGACACAGGCCGCAtccccctctcccacatcaggCTGCTGCCGCCAGACTACAAGATCCActGCGCTGAGCCGTCCCCTGCGCTGCTCGTGGCCAGCTGCTCCAGGAGGCGAGTCCGCAAATGCAGCAAAGAGGGCAAAGACGCGGGACCAAAGCCAGAGGAGACCGCTCCCAAGATCAAAGGAAAACCTGGTCGCAAACCCAAACCCAAACCAGAGACCTCTATGAACCCAGATGGCCGAGAGAAAACCGATCATCCATCCTCCTCCACCCAGCCTGCAGAGAGACCCCCGGCTCCAGCCAAGCCCTCCCAGGACAGGACCTCCTCTGTCCAGAAGGCAGCTCAGGAGAAGCCCCGGCCTGCTTCCCGGCCAACAATGGGAACCCAGGCCAAACCAGGCCGCAAGAGCTCCGCCACGTCTCCCGCTAGTAGCCCTACCCTTCCCAACCCAATCCCCAGGAAGGCCAGCTCAGGCCAGTCTCCCGCTCCTAAACCCGCCCGcgcactccctccctccctctaccCCTCCACCTATGGAAAAGTCCTGACTGTGGATCTGTACAGCGAGCCCAACCTCAGCTCATACAACAACCAGCGCAGAGACCGAGAGATTAGCAGCAGTGTCAGTCCCACCAACAACAGACCAATGTGCAGACCCAATATGGCGACATCATCCGCTGCACCCAAGCCGAGTGCTTCGTCCACACCCAGACCAACCTCTGCCTCCTCATCCAAAACCAAACCCTCCTCGGAGCATCACAGACCCAGCCACAGTGCTGGACTCATCCCCAGCCCCATCTCCAGGCTGTCAACGGGCAAACCCGGCTCTTCGCTGACTTCCAGACCTTCCTCATCTTCGTTGTCGTCATCATCTGCCCCTAGACCCAAACTGAAGATGCCGTCTGACCAGCTTTCCTCCAGACCCAGCACCATCTCCAGGCCCAAGCCCAGCCCGGGGCAAAGTGACGTGGGCTCGGTGGTGAGACGCAAGCCCCTGTCTGCGGAGCCCCTCGTGAAGCTCGACCATGAAGGCGTCACCTCCCCCAAGACCAAGAAGACCAAGGCTCTGATGTTACTAGAGGGTCGGGGCGTCAGAGGAGATCACACCCCCATCACCACAgccacagccaatcagaaactgCTAAAAGCCAAACCGCTGAGAGCTCTGGATAGAGGCCTGCCCGAGAAAGACTACAAAGCGCCGATGCTGGCTAAGGAGAAGGCAGAAGGTCGCGGCAGTGCTGCCAGAGGACAGGGGATGGACACAAGAGAGGAGAAAGgtaaaagagaggagaggaaggaggtggagaaaagagaggagaggaagatgaaAGAGGAATCTCAGAGTAGCAGCAGCTCAGAGTCAGAGGAAGAACGGGAGAAAGGgaagatgaagaaaaagaagaaatgcaCCTCAAGTTGCtcgtcctcctcttcatcctgctCCGGTTCCTCCTCGTCTTCTTCGTCCTCGTCCTCTTCATCGTCCTCTTCGTCCACTGATGACTCTTCCTGCAGCTCAGATGAAGAGAGGACTCCCACTTCTCCACAAGGCCCCGTCACCCCACCTCCAGTACAGGACAAACccaaagaagaaaataaagaaggagaggaggaagaggggaagGATGAGGTGGAGGTAAAAGTGGAAGAAGAAGAGCTGTCTCGTCTCTCACCATCTTCCTCTCCTTCGACCTCTCCGACTCCGTCTGCTCCCGCTAAACCAGCCACGGGGAAGGGCTCTGGGCAAAGGGGCCGTCCTCCGAAACCAAAGCCCAGCGGAGGAGAGGGGAAGGTGGGGAGACCGAAGCGGAGAGAGGGGGTCCACCTCCCCACGACCAAGGAGCTGGCTAAACGTCAGAGGCTTCCCAGTGTGGAGAACAGGCCCAAAATCTCTGCTTTCCTTCCAGCCAGACAGCTCTGGAAGTGGTTTGGAAAACCCACTCAGAGACGTGGTATGAAGGGCAAGGCCAAGAAGCTCTTCTATAAGGCTATTGTGCGTGGCCGAGAGATGATCCGCATCGGTGACTGCGCTGTGTTCCTGTCTGCCGGTCGGCCCAACTTGCCCTTCATCGGCCGCATCCAGAGCATGTGGGAGTCGTGGGGCAGCAACATGGTGGTCAGGGTCAACTGGTTCTATCATCCAGAGGAGACAAACCCCGGCAAGAAACTTACCGACAAGAAGAACTGGGACCAGATGTGTGGTCAGTCTTTACCAGCAGCTCTGCACTCTTCTATCCAGAGGAAAGACTTCATGGAGCGCGCCCTCTACCAGTCGTCTCACAGCGACGAGAACGACGTGCAGACGGTCAGTCACAAGTGCCTGGTGGTCAGCGTGGAGGAGTACGAGCAGATGACCCACACGCGTCGCTACGCCGACAGCGAGGACCTCTACTACCTGGCCGGCACCTACGAACCCACCACCGGCATGATCTTCAACACTGACGGAGTCCCGGTCATCTGctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206310 lncRNA downstream 2552 5660086 ~ 5660898 (-) True G152270
TU206292 lncRNA downstream 57362 5601313 ~ 5606088 (-) True G152256
TU206284 lncRNA downstream 75715 5583379 ~ 5587735 (-) False G152249
TU206281 lncRNA downstream 75715 5585236 ~ 5587735 (-) False G152249
TU206282 lncRNA downstream 78281 5583379 ~ 5585169 (-) True G152249
TU206322 lncRNA upstream 22374 5737931 ~ 5783361 (-) True G152280
TU206342 lncRNA upstream 76410 5791967 ~ 5792175 (-) True G152298
TU206347 lncRNA upstream 158220 5873777 ~ 5874308 (-) True G152302
TU206378 lncRNA upstream 233257 5948814 ~ 5949019 (-) True G152329
TU206379 lncRNA upstream 233720 5949277 ~ 5949495 (-) True G152330
XM_039824952.1 mRNA downstream 49728 5610590 ~ 5613722 (-) True atp5mf
XM_039824832.1 mRNA downstream 80586 5580263 ~ 5582864 (-) True bud31
XM_039825595.1 mRNA downstream 95911 5549291 ~ 5567539 (-) True top3a
XM_039825214.1 mRNA downstream 122249 5533856 ~ 5541201 (-) True cbx7a
XM_039824642.1 mRNA upstream 10329 5725886 ~ 5730322 (-) True actb2
XM_039825058.1 mRNA upstream 78550 5794107 ~ 5818120 (-) True rnf216
XM_039825200.1 mRNA upstream 106069 5821626 ~ 5840646 (-) False smurf1
XM_039825199.1 mRNA upstream 106069 5821626 ~ 5840646 (-) True smurf1
XM_039825815.1 mRNA upstream 159185 5874742 ~ 5881666 (-) False wipi2
TU206279 other downstream 49782 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 49782 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 80589 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 109200 5549318 ~ 5554250 (-) False top3a
TU206084 other downstream 199032 5461846 ~ 5464418 (-) True G152114
TU206522 other upstream 466851 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 1004227 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 2366581 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2725622 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 3015840 8731397 ~ 8733019 (-) True G153172

Expression Profile