RNA id: XM_039825199.1


Basic Information

Item Value
RNA id XM_039825199.1
length 3566
RNA type mRNA
GC content 0.49
exon number 18
gene id smurf1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5821626 ~ 5840646 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCACTACGTGCTTGAGCCTGCCCGAAAATGCTCTCCCGTGTTGTTGGGTTTCGAAAGAGCGCAGGACTTTGCGatgaaataatacatttttaccCGTGAAGAAAACGAAAACAAACCGCATGTTTTTAAACTGAAGTTGTTCGCGTTCCCATTAAGTGGTGAAACGGTGATTTTGGGAGACTCCAAGGGGAAGTTTGTGTGATCGTTTTCCCGGAGTGATGTCGAATCCAGGGACTCGGAGGAACGGGTCCAGCATCAAAATCCGACtgacagTATTATGTGCCAAGAACCTCGCAAAGAAAGACTTCTTTCgCCTGCCAGATCCATTTGCCAAGGTTGTGGTGGACGGATCAGGTCAATGCCACTCTACAGACACAGTCAAGAGCACACTGGACCCCAAATGGAATCAGCACTACGACCTCTACATTGGAAAGACAGACTCCATCACCATCAGTATATGGAACCACAAGAAGATCCATAAAAGACAGGGGGCGGGCTTCCTGGGCTGCATACGACTGCTGTCAAACGCCATCAGCAGGCTAAAAGACACAGGATACCAGCGTCTAGATCTATGTAAGCTGAACCCCTCGGACAGTGACGCAGTGCGGGGGCAGATAGTAGTGAGCTTACAGACGCGAGACCGTATCGGCAGCGGAGGCCCTGTGGTGGACTGCAGAGGCCTGTTGGAAAATGATGGgcctgtgTTCGAGGGATGTTTCAGTGAAGAGCCGCTACCCTACTCCGACCCCACTGGTGCGGCGGGGGGTGGGAACTGTCGGCTCGACTCACCCGGTCAGGAGGGCCGTCTTCAGACGCAGAGAATCAGAGGGCAGGACTCCAGAGGCCATGGCCACACCCCTCAGAACAGACCGCATGGGCACCAACCGCCTGATCTGCCAGAGGGATACGAGCAACGAACAACAGTGCAGGGCCAGGTGTACTTCCTTCACACACAGACGGGCGTCAGCACCTGGCACGACCCTCGAATACCGCGGGACCTGGCCAGTGTGAGCTGTGAGGAGCTTGGGCCGCTGCCAGTGGGCTGGGAGGTCCGAAGCACTGTGTCGGGCCGGATCTACTTTGTGGACCACAACAACCGAACAACACAGTTCACAGACCCGCGCCTACACACCATTATCAgCCAGCAATCCCAAGCGAAGGAATCCTCACAAGCCCCCCCGATGGATGTGGGGGGCGAGGAAGGGGGAGGTGGAGGAGTGGGCGGCGGAGGAGATGGAGATGTTGCAGCGCGCTACGAGAGAGACTTGGTCCATAAATTGAAGCTGCTCCGCCACGAGCTGTCCTTGCAGCAGCCTCAAGCAGGACACTGTCGCATAGAGGTGTCCCGAGAGGAGATCTTTGAGgagTCCTATCGGCAGATAATGAAGATGAGGCCCAAGGACCTGAAGAAGCGTCTGATGGTGAAGTTTAGGGGAGAGGAGGGCCTGGACTATGGTGGGGTGGCCAGGGAGTGGCTGTACCTGCTGTGTCATGAAATGTTGAACCCCTATTACGGCCTGTTCCAGTACTCCACAGACAATATCTACACACTACAGATCAACCCCGACTCCTCCATCAACCCTGACCACCTGTCATATTTCCACTTTGTGGGCCGTGTGATGGGCCTGGCAGTTTTTCACGGTCACTACATCAACGGGAGCTTCACGCTGCCCTTCTACAAACAGCTGCTAGGCAAACCCATCCAGCTCAACGACCTGGAGACGACCGACCCGGAGTTGCACAAGAGCCTCGTCTGGATACTAGAGAATGACATCACTTCAGTCCTCGACCACACTTTCTGCGTGGAGCACAATGCCTTTGGGAAGTTCTTGCAACATGAACTCAAACCTAATGGCCGCAATTTGCCTGTCACTGAGGAGAACAAAAAAGAATACGTCAGaCTTTATGTAAACTGGAGGTTTATGCGTGGAATTGAAGCCCAGTTTCTGGCTCTACAGAAGGGATTCAGTGAGCTCATCCCCCAGCACCTCCTCAAACCTTTCGACCATAAAGAACTTGAGTTGATCATCGGTGGGCTGGGGAAAATAGATCTTGCAGACTGGAAGACTAACACCCGCCTGAAGCACTGCACAAGTGAAAGCAACGTGGTGCGGTGGTTCTGGCAGGCAGTGGAGGCCTtcagtgaggagaggagagggcgCCTCCTGCAGTTTGTCACAGGCTCCACCAGGGTCCCCTTACAAGGGTTCAAAGCGCTGCAGGgTTCTACAGGTTCTGCAGGACCAAGGCTCTTCACCATCCATTTGATAGATGCCAACACAGACAACCTGCCCAAGGCTCACACATGTTTTAACCGGATAGACATCCCTCCCTACGAGTCTTACGAGAAACTCTATGAGAAACTGCTGACGGCTGTGGAGGAGACCTGCGGCTTCGCCGTGGAGTGAGGACTCCACAAGCAAACCAACAGTCACACTTGCACTTGCACACAGACTATTTGACAttttacacatatacacacacacatcaacagaaTATCAAGTATACGCGGAGTATACGGAGCGGCCAAGCATCACGAGAACACGCGGTCTCTTGCCACCTCTTCACCACCGAACTGTTGGGGTTAAAGGAGGAACCACAGCGGGAGaggaaaagatttaaaaaaaaaaacagacaaaaaaaaaaaaagtattttaaaaattttcaaatgttttgaaGAAGCATTTATATCCTTAAGTTTTAACAAGCTATGATGTCATTCTTCAGAATGTCTACCGCCACAGCGAATTTGACTCCCAAGACATTCGAGTCAACGGACAGAATCGGCCAATCACATGCGAGCCTGCGAACAGAGACCTTTTGAAATCAGACATGAAGAACAAGGCAGAGACTGATTGTCTTTCTGTCTGACATGCCTATTGATTGACTAGTATTCATGCTTCATGTTTAACCACTGTCGTGTATCAGAACGTGTGCATGTACATGtgattgtgtgattgtgtgagaGAGTGGGTGAGTGATTgagggagtgagtgagtgtgtcagACATGGCACCTGGTTACGCTGTAAAAATGATCAAATGAGCCTGCTCCTCTGTTTGCTAACATTTTGTCTCTTCCATTTGTATCTGCGACCACTCTGATCCACtctgatattttattatttattactaaGTGATTACTGACCAAGCTGCTATATGCTCTACAGAGAGCCCACACTAATCTCTTCATCACCCCCTCTACCAGAGTTGAAGGGTCAATTCACTTGCAATTCAAGTAATCCACAAAGTGggttttattgaattttgttacttttttttttttttttaacattcatatTATTGCAGAGAAATGCTCTTGTCAGTGTATGGAAAAACTGTTAGTGTTTTGGTGTTTGAAATACcatgttacatttttttatttgacgtGAAAGGGATTGATCCTCCCAGCCCTATTTTTGAAATCTAACTCTACTGACATTATGGAGAGGTCCGAGGGCTTGAACTAGATATTTAACTAAATGAGCCACGAGGATGGAAAGAAGGAGTCAGCTTCAGGAATTCTTTGGTTGTATGTGACATGTATAATAAAATCTCAAAACTTT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206342 lncRNA downstream 29451 5791967 ~ 5792175 (-) True G152298
TU206322 lncRNA downstream 38265 5737931 ~ 5783361 (-) True G152280
TU206310 lncRNA downstream 160728 5660086 ~ 5660898 (-) True G152270
TU206292 lncRNA downstream 215538 5601313 ~ 5606088 (-) True G152256
TU206281 lncRNA downstream 233891 5585236 ~ 5587735 (-) False G152249
TU206347 lncRNA upstream 33131 5873777 ~ 5874308 (-) True G152302
TU206378 lncRNA upstream 108168 5948814 ~ 5949019 (-) True G152329
TU206379 lncRNA upstream 108631 5949277 ~ 5949495 (-) True G152330
TU206416 lncRNA upstream 151299 5991945 ~ 5994924 (-) False LOC120574101
TU206417 lncRNA upstream 168601 6009247 ~ 6010851 (-) True G152362
XM_039825058.1 mRNA downstream 3506 5794107 ~ 5818120 (-) True rnf216
XM_039824642.1 mRNA downstream 91304 5725886 ~ 5730322 (-) True actb2
XM_039824638.1 mRNA downstream 104278 5661861 ~ 5717348 (-) False tnrc18
XM_039825815.1 mRNA upstream 34096 5874742 ~ 5881666 (-) False wipi2
XM_039825814.1 mRNA upstream 34096 5874742 ~ 5881666 (-) True wipi2
XM_039825018.1 mRNA upstream 64292 5904938 ~ 5916956 (-) True ap5z1
XM_039825020.1 mRNA upstream 64292 5904938 ~ 5916955 (-) False ap5z1
XM_039826252.1 mRNA upstream 118546 5959192 ~ 5967183 (-) True c1qtnf6a
TU206279 other downstream 207958 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 207958 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 238765 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 267376 5549318 ~ 5554250 (-) False top3a
TU206084 other downstream 357208 5461846 ~ 5464418 (-) True G152114
TU206522 other upstream 341762 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 879138 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 2241492 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2600533 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2890751 8731397 ~ 8733019 (-) True G153172

Expression Profile