RNA id: XM_039825190.1


Basic Information

Item Value
RNA id XM_039825190.1
length 4697
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC120574755
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12320594 ~ 12341283 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCACGATTTTAATTCCAGGAAGAAGCGGATCCAACGTTGTATCCACCGCTGCTGCCTGGCTCTGTGCCTTCAACGTTACAGCGttgatttaaaataatttcataATCTCTGGTTGAGAGCCCAAACACGTTTTCTATGTAGTCAACGGCCGTCAGGACCAGCTGTCTATCCCGGTTTGAGACCAGAAAATATGGACTGGACAGTGAGCAGTCGGGCCCTGTTGTGGTGCATTTTGGCGTTGCTTTGCTGCGCTGGTCTCCCACAAAAGGGGGTTTGCAGCGCCAGCACAGTTTCCCTTCCTGAAAGCCTGCTCTTTGTGTCCACCCTGGATGGAAACCTGCATGCTGTTAGCAAGAAATCCGGCTCGATCAAATGGACTTTGAAAGAAGATCCAGTTCTTCAGGTCCCCACACATGTGGCAGAGCCAGCCTTTCTGCCTGACCCCAACGATGGCAGTCTGTACTCTCTGGGAGGAAAAAACAACGAAGGCCTCACAAAATTACCGTTCACTATCCCTGAGTTGGTCCAAGCTTCTCCCTGTCGCAGCTCTGATGGCGTCCTTTACATGGGTAAGAAGCAGGACTTGTGGTATGTGGTGGACCTGTTGACTGGTGAGAAGCAGCAGACCCTGACTTCCTCCTTTGCTGAGATGCTGTGTCCATCTTCATCTCTTCTCTATTTGGGACGCACAGAGTACACCATCACCATGTATGACACCAAGAGCAGAGAGCTGCGCTGGAATGCCACCTATTCTGATTATGCCTCCACCCTTCCTGACGATGACACCAAATACAAAATGGCTCATTTTGTGTCTAATGGTGACGGCCTCGTGGTGACGGTGGACAGCGAATCAGGAGACGTTCAGTGGGTGCAGAACTATAACTCTCCAGTGGTGGCCATGTATATCTGGCAGCGTGAGGGCCTCCGCAAAGTTCCCCACACTAATGTGGCCGTGGAAACCCTGCGTTACCTCACTTTCATGTCTGGAGAGGTCGGCCGCATCACACAGTGGAAATACCCATTTCCCAAAGAGAATAAGCCCAAGAACAAATTCCTggcCACATTATATGTCGGCAAATACTCCACCAGTCTATATGCCTCTCCCTCCCTGGTGCACGATGGAGTCACTGTGGTGCCTCGTGGCAGCACCTTCCCCATGCTGGAGGGTCCGCAAAGCCAGGAGACTGAAGAGGACAAGGAGTGCGTCATCACACCCAGCACCAGTGTCAAGTTCAACGCTGCGCTCCGGGAGCGAAACCGTATCAACTTTATGAGGAACTACCTGCTCCTTATAGGTCATCATGAGACGCCCCTTGAAGCTCACACCAAGATCCTGGAGAAGTTCCCGGACAGCTTCCCTCGCAGTCAAGGCAATGTCATTCCACCGACTACTGACAAGAAAGTTGaggagAAGGTGAATGATAGTGGTATGGATGATGGCCCCCCTTCTCCGCTGCCTGAAACATCTATCCAAGAACCTGGGACCAGCAGTCGCACTGTGCGTCCAGAGGCACCTGTGGACTCTATGCTCAAAGACATGGCCACCATCATCTTCTCCACTTTCCTCCTGGCTGGCTGGGTGGCCTTCGTGATTACCTACCCCAAAAGTGTTcacaagcagcagcagctacagcACCAGGAGTTCCAGAGACAGATGGAGGAGAAGTTGGAGCTGCTTCAGAGACAGCAGCCGTTCCCCCCTGCAGACGTGGGCCTAGGGTTGGCCCCAGACAGCGACTATCTGGAGGTGGCCCGCGCTCGCTCCGAATGCTCAGACCACAGCAGCCCAAATGTCACCCCCCGCGCCTCCAACCACTCCAACCTGTCTGTGTCTGAGCTGGGAAGCTCTGCCAATGAGCACGAAGATGCAGAGGAGGACTCCAATATTGTCAGAGTGGGCAACATAACTTTTCGTCCCAAAGAGGTCTTGGGTCACGGTGCTGAGGGCACCATTGTGTACAAGGGGCAGTTTGACAACCGTGCAGTGGCAGTGAAGAGAATTCTCCCAGAGTGCTTCAGCTTTGCAGACCGGGAAGTCCAGCTGCTGAGGGAGTCAGACGAGCACCCAAATGTCATCCGCTACTTCTGCACCGAAAGAGACCGTCAGTTCCAGTACATTGCCATTGAGCTGTGTGCTGCCTCACTTCAGGAGTATGTTGAGAGGAAGGATTTCGACCGTCATGGACTCGAGCCAGTTATGCTTCTTCAGCAGACCATGTCAGGACTGGCCCATCTGCACTCTCTCAACATAGTTCACAGAGACCTGAAACCTCACAACATCCTGGTGTCCATGCCCAATGCCCACGGTCGGGTCCGGGCCATGATTTCGGACTTTGGCTTGTGTAAGAAGCTGGCAGTGGGCCGCCACAGTTTCAGTAGAAGGTCTGGGGTGCCTGGCACTGAGGGCTGGATTGCCCCTGAGGTTCTCAGCGAGGACTGCAAAGACAACCCGACCTGCGCCGTTGATATCTTCTCTGCTGGTTGTGTGTTCTACTACGTGGTGTCTCAGGGAAGCCACCCCTATGGCAAGTCTCTGCAGAGGCAAGCAAACATCCTACTGGGCACATACAGCCTTGACTATCTGCAAACTGACAAACATGAGGCCATTGTAGCCAGAGATCTAATAGAGCAGATGTTGAGCATGGAACCCCATAAGAGGCCTTCAGCTGAGAGCATTCTCAAACACCCTTTCTTCTGGAGTCTGGAGAAGGAGCTGCAGTTCTTTCAGGATGTGAGCGACAGAATAGAAAAGGAACCGCTGGACGGACCAATCGTGAGGCAGCTGGAGAGAGGCGGGAGGGCTGTTGTCAAGGGGGACTGGAGAGAGCATATCACAGTGCCACTGCAGACGGatctcagaaaatttCGCTCCTATAAGGGTGGGTCAGCCAGAGACCTGCTGCGTGCAATGAGAAATAAGAAACATCATTACCGAGAGTTGCCTGCTGAGGTTCAGGACACTCTGGGCTCCATCCCTGATGACTTTGTGTCCTACTTTACCTCCCGCTTCCCCCACCTGCTAATGCACACATACCTGGCCATGCGGACCTGTGCATCTGAGAGACTATTCCTGCCTTACTACTCTACTGCAGAGCAGTTTGCAAAAACACAGGCCCAGTACACCGTACACCTCGGGCCACAAAGACCAAATGAGCCATGCACTCAAAACCTgccaacacacacatcatcacctGAGGAACCTACACACTCACAGCCGGTGCAGGTGTCTGACATAACACCTGTTGAATCGGTGCCCTCTACATCACCAGATGAGCCTGTATCTGCACATTTGCCAGTTCAGACAGTGCCGCCAACAGCGCCAGCACTGTCCACACAGACTGACTTGCACAGTCAAACAGTGAACCCCACATTTGCTTCTGAATCGCCTACAGATCCTCTCAGGAAAAAAGAATCCAGTCAGTGTGAGATGCACACACCGCCAGGTCCTTCAACACTGGATAGTGAACCAGTGTGAACTGAACCAGAGTCAGGTGGACCCAGCACAGATGGGAGCATTGCCTTAAAGAGTGGCACAAAGTGGGCTGCACCGTGAGCTGGTGAGGACCAGGCCTGCAGTGCCTGGGATCCACTGCTCGCTGCAGCTGCACCCTAAACTAAGTGCCTTCTGCTCACATGGGTTCAAATGTTCCCCAACAGAGCCGTCCACAAGTCTGTCTCTGCCTAGAGGAAGTCAGATAACCAACATGGTGTTGTTGGACATTATCTTGTAGCTGGACTGAGCaaagagaattttttttattttataacggcatgtccaaaaaaaagtgtttgtccCAAAAATATCTGGCCTCTATTGTGGGGGGAAAACGTGTCTGGATGTTGTTGTTGGGTAGTTTTTATAGTGCAATGTTGTATTTCTGAGTGAGCCTGTTCACTGCACAAATACTGTAGATACTTTTTTGTATAGACTGATTCAGAATTTGGATCATTGATGATAAATCATTTAATGTGGCCCATGTGCCTTTTTTAACTATCACTGTGCTGTATGGGTACAAATCTTTCAAATTGACTATGCTAAATGTGCTTGATTCCCGTTAATGCTGCTAGACTGCTTCTCTTGTCAATCACGTTTTGCTGACTCCGTAAGAGTGGACTGTTCCAAAGGGTGTTCAGGGTGGCACCTGAATACAGTCGGTAATTTTATTCTCAAGTGATTATGTAGTCAAATATGAATTTAGAGGTCAGGCTGCAGAACTTGCGTATCATAACTTTTCAAGGGTGTCAAAGTGAAATTAATGACTTGCACAataaattctatttttttttttttatactaagATTTTGCTTGTTGATCTTGCTGCTAACTACAGTCGGTGCCTAACGGAAGCTATTTATatttaacaaatatttttatttaaaggtgcacCAAGCTGGTATATTGGTATGCATTGAATCCTTTGGATTAGCTATTTCTACGGTTGACGTTGGTTGGAGTAGCCTACAGTTTAACCTTTCTCTATCTGATGTTGAAAGCAAAATAAGGAATTTTACTATAAGCAAATGAAGGTCTCTGCGAAAAGGACCAGCATAGTAAAACAGAGCTGTACAGAGCCAGTGTGTGAGTCACTGCATTCTCTTCAAGTCACTGATATAAATGTTAATATATCAGACTTGCATATCAGGATGTAAACCGATGAATACAAATAAACCAAAATGCAATTTAGCCAGAAAGTAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0005524 ATP binding molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209066 lncRNA downstream 136769 12183611 ~ 12183825 (-) True G154305
TU209033 lncRNA downstream 164782 12131386 ~ 12155812 (-) True G154275
TU209013 lncRNA downstream 229613 12087003 ~ 12090981 (-) False LOC120574419
TU209010 lncRNA downstream 230575 12085985 ~ 12090019 (-) True LOC120574419
TU208997 lncRNA downstream 265390 12052806 ~ 12055204 (-) True G154248
XR_005641900.1 lncRNA upstream 19956 12361239 ~ 12373994 (-) True LOC120574757
TU209165 lncRNA upstream 58969 12400252 ~ 12401431 (-) False G154368
TU209168 lncRNA upstream 58969 12400252 ~ 12401475 (-) True G154368
XR_005641891.1 lncRNA upstream 225895 12567178 ~ 12567810 (-) True LOC120574719
XR_005641890.1 lncRNA upstream 226936 12568219 ~ 12568696 (-) True LOC120574718
XM_039825188.1 mRNA downstream 330 12309749 ~ 12320264 (-) True samd9l
XM_039825183.1 mRNA downstream 13428 12298317 ~ 12307166 (-) False gaa
XM_039825182.1 mRNA downstream 13737 12298317 ~ 12306857 (-) True gaa
XM_039825185.1 mRNA downstream 23161 12275367 ~ 12297433 (-) True tbc1d16
XM_039825184.1 mRNA downstream 26276 12275367 ~ 12294318 (-) False tbc1d16
XM_039824679.1 mRNA upstream 1521 12342804 ~ 12357092 (-) True tex2
XM_039825067.1 mRNA upstream 72148 12413431 ~ 12427506 (-) True axin2
XM_039825065.1 mRNA upstream 96261 12437544 ~ 12565471 (-) False cep112
XM_039825063.1 mRNA upstream 96261 12437544 ~ 12565471 (-) True cep112
XM_039825064.1 mRNA upstream 96261 12437544 ~ 12565329 (-) False cep112
unassigned_transcript_847 other downstream 833669 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1095048 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1183112 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641867.1 other downstream 1239988 11078587 ~ 11080606 (-) False LOC120574486
XR_005641884.1 other upstream 86221 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_848 other upstream 501610 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 615239 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 632049 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 994166 13335449 ~ 13421951 (-) False prkar1b

Expression Profile