RNA id: XM_039825067.1


Basic Information

Item Value
RNA id XM_039825067.1
length 4042
RNA type mRNA
GC content 0.51
exon number 11
gene id axin2
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12413431 ~ 12427506 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGCCGGGCGCTTATGGACCATATCGCCAGTAGTTTCCGAGAAGATGCTCCTCGACCCCCGGTGCCGGGGGAGGAGGGCGAGGCGCCCTGCTACCCCGGCAAACTCGCAGTGATGAAACCCGTGGAACCCCCCAAATCGGTTTTGCTCGGCTCTCCGGGATCCTCGGCGAGGAGGAACGAGGATGGTCTTGGGGAGCCAGAGGGGAGTGCCTCCCCGGACTCGCCGCTTTCCCGGTGGACAAAGTCTTTGCACTCTCTCCTCGGGGACCAGGACGGCGCTCTTCTTTTTAGGACATTCCTGGAGCGAGAGAAATGTGTCGACACTTTAGACTTTTGGTTTGCCTGCAATGGCTTTAGGCAAATGGACCTCAAGGATACCAAAACGCAGAGAGTCGCCAAAGCAATTTACAAGCGCTACATCGAAAACGACAGCATTGTCGCCAAACAGCTCAAGCCGGCGACTAAAACCTTCATACGGGATAATGTCAAGAAGCAACACATAGACTCCGCGATGTTCGACCAGGCGCAGACGGAGATCCAAACCAACATGGAGGAGAACGCGTACCAGATGTTTCTGACCTCTGACATTTACCTCGAGTACGTGAGGACTGGGGGAGAAAACCCGAATCACGTCAGCTCGAACGGATTGGGTGACCTGAAAGTTGTATGTGGATACCTGCCCACGCTCAATGAAGAGGAGGAGTGGAATTGTGATTTCAAAGCCAAAGCGCTGGTTGGATTGTCGGCGAAGGCGCAGAGGACCACCGTGTCCATGAGGGCGGTGGAGGTGATGGAAAGAGGATACAGATCATACAAGAGAGGAGACTCGATCAACCCCTGCCATGTGGGCTCTTTTGCCCCCGTCAGCAGCACCAATGACAGCGAGGTTTCCAGTGACGCCTTGACCGACGATGCCATGTCTGTGactgacagcagtgtAGATGGCATTCCTCCGTATAAACTGGGCTCAAAGAAACAGATACAGAGGGAGATGCAGCGCAACATGAGGATGAACAGCCAAGTCTCTCTGCCTGCTTTCCCtCGTACTTGCCGTCCACCCAAGGAGATGGTCCCAATGGAGCCGTCGCAGTTTGCAGCTCAGCTCATCTCCCGCCTGGAGAGCCTGAAGAGAAAGCAGGACACCCTCAGCTCTCTGgaggagaagctgcagcagATTCAGGAGgaggaggaaaaagaagacTCCGAGATCCTAGGAAGTGCTCCCCAGCTCTCTCCCCACCCCTTGACCCTCCTCCCTGGCTCCTCTGACGAGGACCCCCAGGCAATTCTGGACGAACACCTGTCTCGCGTCCTGAAGACCCCCGGCTGCCAGTCCCCCGCTGTCATCCGCCACTCGCCTCGCTCCAGCTCCCCAGAGCACAGGCCCATCATGCGCACAGGCTTTGGAATCAAGGCCCTGGTTAGGACAGGGCCCTCCAGTTCTTCTGTCCCTAGTCCTGACCAAGGGGCTATCACTCGCCTTGGGCCTAACAGGACCTTCGTAAGCAGGCAGAGCACAAAACACATCCACCACCACTACATCCACCACCATGCCAGTCCTAAGACTAAGGAGCAGATTGAAAGGGAGGCAGCCCTCAGGGTGCATGGCCTGTGCTCCAGCAGTGCCGAGTGCCAGCCTTACCAGCGCAGCCGCAGCCTGGGCAGGGAGATGTGTGGGTCGGTCTCAGCAGACAGCAGTGTGGGGCGTTCCAGCTCTCTGTCCAGGCGCATGTGTCGTTCAGGGGCTGAGGATGGAGTAGCAGAAAGGTGTGTGGAGGACCTACAGCTGCCCAGTGACACGGCAGATCCCACCCAGAATGTGCTGCAGTGGATCCTGGAAAGTAAACGGCAAGGCAGGCACAAGTCTCACAGTAACCAGAGCACCAAGAAATCCTTTGGAGGCTCCTCTACGCAGACGCACACGTGGGGTGGTGGTGGAAGCTGTGGCCACCTACGTAGCCACCAGCCAGCCCAACCATTCATCCAGGACCCAGCCATGCCTCCCCTGCCCCCTCCCAACACTTTGGCCCAGCTGGAGGAGGCCTGCCGCCGACTGGAGGAGGTCTCCACCAAGACCACCAAGCAAAGGCATTCCATTTCCAGTCTCCAGCAAGAGAAGAGCCACCTCGTTCCTGTCCAGGGTGAAGGGTCCGTCCCTCTGTCTCTAGCCAATCCCAGCCCTGCTGGCCTCCTCACCACCAGCCCCGGCCTCCAATCAGAAGAGTTGAAGGAGTGTAAAAAGGGTTTCGGAGGCGAGACGGTGGTGACCTATTTCTTCTGCGGTGAGGAGATCCCCTACCGCAGGAACATGAAGAGCCACAGTCTCACCCTGGGCCACTTTAAGGAGCAGCTCCGCAAGAAGGGCAACTACAGGTACTACTTCAAGAAGGCCAGCGATGAGTTTGAGTGCGGTGCGGTGTTTGAGGAGGTGTCAGACGACAGCTCCTTACTGCCCACCTACGAGGGCAAGATCCTGGGCAAGGTGGAAAGGATGGAGTGAGACCTTCCCATGTTGTGGATTATACAGACGTTTCACACCTCCATGGATGTACTCCCTGCATAtgctccaacacacacacacacacaccacaaaatatgtcttttaaGCTAAGACTATGACTGGAAATGTTGTTGAAGGAATGTCAAAGAGGTTTGGGCAGATGGACTGGATGAACGAtggacaggaaaaaaaaaaaggaggacaaGTTATCGCTATTACAGGACTATCATATGGACAACCCGCTTTGAAGTGAAGAAAGTGAAAGACTGTGTGTTGCTGGACTGAAACATCTTCGTGTTTGCAGAAGAGAATAATCTTAAGAGACTCTAGGTGAATGACCACTCCTCAAAGAAGCGGGCCGGTGGGTTCAAAAGACTGACAGCCTACCTGAGCCTGCCTGCGCTTGCATCTGCCCACGGGCACTTGCTAGCACACCACTAATATGTATATGCAGATATACATGTACATTGCATTGTATTGTGATGCTCGTATTGCTGTGTAAAGATTTATATTGCTATTTATTGGAAATATCCCTGCCCTAACTCTATTATTCCTCCATGGACAAGCTGCTTGGAGTTGGAGTAACTTCTCCAATTTTCCACATCtgtgatttccccccccccttctgaGCATCAGTTCTCAAGCAAAGGAAATGGGTTTTATGCATTTTCTGCCCCTCGTATTGAACTGTAAACTTCAAAAATACCTCTTCAAAAAACTCCACCTCTGTTCCTGCAGATTTAGTGGGACATCATCTCTGATCTTTTGGCTGTAGAGCTTACTGCTGAAGCTTTGAGAATGGCTCTTTATCACTTAAAAGCTCGATAATATATTTACTACTGCAGTGCTATTTGTGGCTGTGTCCCCATCTGCTCTGAGTGTACTatgaaaaaaggaacaaaaaatgCTATTCACGTTTAATTCCCAACTCTGGGACTCTGCCCAGCTAGCCTTGATCTGTCGCGTCTTAGTGCCTTTGTTTCAGTGGCGCAGGCATCGCACAAATAGCCTGTATTTACTATGAGGAAACTGCCCTGAACAGGTCCTAGAGTCCCCAAAATGTGTTTACACCAATATTAATATTTACCAACAAAAAGCTCTATAATGTGCTCCCCAACGTGCTTGCCTATGTGATTGTGTGACTGAGTTGCTTTTGAGTAGGGTTACTGTGTGTATTTGAAACCTGCACTATGAGCTGCAGATGATAACGGTGGTGATATACACTATGTCCATAGTGTGTTAATTGAGTACAGTAGCTGTGCCTACATGGATTCTTGCCGTGTTTTACCCAATTTTCAGGGTCCTATTACTCCCTTGGTTTTTACAAGGGGCCTTATGTTGAAAAGATATTTTTATGCCTTTTAGTATCCGTTTCATcatgtttatgttttataatatttttcatGGCTTCCTTGGCTCCACTTGTAAACTGCAAATGATGCGTTCTATAGAGCTCAGTTATAAAAGATGCCTCGGTACtttaattattgtaattatGAAGAGATGTAGCCTTTAttaaaatgttctatttttcAAATTA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04385 AXIN2; axin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209168 lncRNA downstream 11956 12400252 ~ 12401475 (-) True G154368
TU209165 lncRNA downstream 12000 12400252 ~ 12401431 (-) False G154368
XR_005641900.1 lncRNA downstream 39437 12361239 ~ 12373994 (-) True LOC120574757
TU209066 lncRNA downstream 229606 12183611 ~ 12183825 (-) True G154305
TU209033 lncRNA downstream 257619 12131386 ~ 12155812 (-) True G154275
XR_005641891.1 lncRNA upstream 139672 12567178 ~ 12567810 (-) True LOC120574719
XR_005641890.1 lncRNA upstream 140713 12568219 ~ 12568696 (-) True LOC120574718
TU209206 lncRNA upstream 249987 12677493 ~ 12679110 (-) True LOC120574720
XR_005641892.1 lncRNA upstream 250049 12677555 ~ 12679090 (-) False LOC120574720
TU209226 lncRNA upstream 307997 12735503 ~ 12737463 (-) False LOC120575506
XM_039824679.1 mRNA downstream 56339 12342804 ~ 12357092 (-) True tex2
XM_039825190.1 mRNA downstream 72148 12320594 ~ 12341283 (-) False LOC120574755
XM_039825189.1 mRNA downstream 72148 12320594 ~ 12341283 (-) True LOC120574755
XM_039825188.1 mRNA downstream 93167 12309749 ~ 12320264 (-) True samd9l
XM_039825183.1 mRNA downstream 106265 12298317 ~ 12307166 (-) False gaa
XM_039825065.1 mRNA upstream 10038 12437544 ~ 12565471 (-) False cep112
XM_039825063.1 mRNA upstream 10038 12437544 ~ 12565471 (-) True cep112
XM_039825064.1 mRNA upstream 10038 12437544 ~ 12565329 (-) False cep112
XM_039825066.1 mRNA upstream 10039 12437545 ~ 12542813 (-) False cep112
XM_039825577.1 mRNA upstream 267379 12694885 ~ 12727024 (-) True LOC120575015
unassigned_transcript_847 other downstream 926506 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1187885 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1275949 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641867.1 other downstream 1332825 11078587 ~ 11080606 (-) False LOC120574486
unassigned_transcript_848 other upstream 415387 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 529016 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 545826 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 907943 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1623232 14050738 ~ 14057312 (-) False med9

Expression Profile