RNA id: XM_039825065.1


Basic Information

Item Value
RNA id XM_039825065.1
length 3134
RNA type mRNA
GC content 0.50
exon number 25
gene id cep112
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12427504 ~ 12565471 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGACGCTGTGTCTCCACGGAAACCGGATGTGGCGTGAGTGAGGACGCAGCAGACGTTTGAATCGTTTTAGCGGTCAAATCAGTGCCTAAATCCTTGGACACCATGAGCAAGCACGAGGACTCATGGGATAGTCTGGACACTGAGTTTGACCATTTTCTACTGGATATGAAGCCATATGTGCTTAAACACCCCAACAAGACAGAACGCCAGCGATGTGCTGTATGGATAAAGAAGCTGTGTGACCCAGCCACATGTGGTTCAGGTCTGATAGGTCGCAAGAACCGCAACATGCACGCTCGTTTGCTTCTTCAAATGCTCAAAAGAGGGGTCCTGGAGAGGCCTTTCAACAGCAAACCGGAGCCTGGCAGTCTCAAGACACTCCCTACCTACATGtcaaTCTACTTTGATGAGCCACTGACTGCTCAATCTGTGGAGCACAGCAATGCAGGTCTGCCTGACTGGGTGACAGGAGAGCTAGGTGGCTATACTGGTGACAGTTTGGCTGCCAGTCTGCTTAAGGACAGAGTCATTTCCACACCTATCACAGCTCATCACAGGAGAAAGCTGTATGATGAAAAGACCCCATCACGACCTGTGTCCTCCAGTCCACTCAAACAGTCACCCAGACATGATGCCAGGAGGGTGGATATGGGGCTGAAGGCAGATATGTCTCCCGATGACAGTGACCTAGAGGCTCGTCTCAACACCTGGAACCTGGGGACTGATATGAAGATCAAAGTTCTGGAGTCTAAGCACCAGGAGGAGAAACTGAAGATGCAGCAGAGACACGATGCAGATGTTGAGAAAATTCTGGACCGAAAGAATGGCGAGATTGAGGAAATGAAGAGCATTTATCGGGCCAAGCAGAAGGAATCGGAGGAGATGACCCATAAGCTGGAGAAGAAAGTTCAAAGTGTGCTGCGGGAATCCCAGGTCATCTGCGAGAGCAAAGAGAAGCAGATtgctgagctgaagaagatGTCGGATCAGAGCACCGACTCCCTGAAAAACGAGTGGGAGAAGAAGCTCCATGCTGCTGTGACAGagatggagcaggagaagtttgAGTTGCAGAAGAAACACACTGAGAACATCCAGGAACTGCTGGAGGACACCAACCTAAGGCTGGCTAAGATGGAGGCGGAGTATAATGCTCGGTCACAGGCAACTGAGGAAACGGTGTGTGAGCTGGAGCTACGGGTAAAACGGCAGTCGCTGGAGGTGGAGAAGGGCAACGCGCTGCGCCAGAAGGTGACACAGGAGAAGGCCCAGTTGGAGATTCACATTGCATCCATCGGCGCCGAACTGCAGGAGGCCAACAGACGAAATATGATTCTGCAGAAGGAGATGGAGCAGCAGAAGGAGCAGCATGAGCAGACAGTGCAGAGGCTCCAAGCCAAACATGAGACTGACATGAGCCACTTACATCAGGAGCATGCTCTGTCTGCTGCTAAGTCCTCTGAAGTAATGGAGGACTTAGAGAAAACTGTAGCTCTACTCAAACAGCAGCTCCTGGACAGTGAACATCGGAGACACCAACACGTCAAGGATCAAGAGATGAAGTTTCACCAGGAAAAAGATGAAGTGCAGATCAACTGTGAGAAAAAGGTTTTGGCAATCCAAAGTgaagcagagaaagacagaacagAGGCTAAGAGGAAGATAGCCAAACTAGAAGATGCACTCAGGGAGATGGAGAGCCAGCTGGACAGAGCCAGGGAGAGCCAAAGGCAGCAGATCCAGCAGGCAGATATGGCGCTGGAGCAGTTCAAGAAACAGGTGGAGCTGAGCTCTGAGAAGACCTATGCTGAAATGAAACTCCAGATGCAGAAGGTCGACGAGGACCTGATCCGCTCCAAGGCTCTCAGGGAGAACCAGGCCAAAGAGTTCTCCCAGCAACTTGATGCACTCAGACAGAAATATGAGCAGCAGATGGCTGAGCAGCGCATGCAGCACGAGCAAGAGAGGACgcggcaacagcagcagcacagcgcCGAAAAGGACAGCCTGGTCCAGGAGCGCCAGTGGGAGGTGAGCAGCCTGGAGAGGCAGGCCAGGGCAACCCTGCAACAGCATCAACAGCACACCCAGGAGTGGAGGAAGCGCGATGCCCAGACTATTTCAGATTTGGAAGCCCAGTTGTCGAGTCTACGTGAAGAAATCCAGGGAGCCCATGCACAGCACAAGCAACAGTTGGCTGAGATGGCATTGCTCCGGGAGGAGGAAACACAAAGGGCGTTCCTGGACAAGGAGGCATCCCTGGAGCGGCTCCGCTCTGATATGGAGCGTATCCGTGGCGACCTTGAGAGAAGCCACCAGCGGGAGAAGGATGCTGCTCAAGAGAAGACCAACAGCAGGTTGAAGCAGATTGAGAAGGAGTACAGTCAGAAGCTCGCCAAGTCTGCCCAGCTAATTGCGGGACTACAGACATCTGTCTGTGACTCAAAGGAAGAGGTTGTTCGTCTGCAGCAGGCCATGGCCAAGCAGTTGGAGGAGTCCAACGTTCGATGGgatgaggagaggaggacaaTAACTCACCATGCTGATAGGGCCAACAAGGCTCTgcaagaaaaggtggaaagtcTACAGAGGCAGCTGCACTGCTCAGAGAAGAAGCTGCTTAGCAAAGAGCTTGAGACCGAAGAGAAGGTGACTGTGGTGCGTCAGGAGTACGAGGAGAAGATCAAAGGTTTGATGCCAGCAGAGCTCAGACAGGAACTGGAGGACACCATCACCTCTCTGAAAGCTCAGgTTAACTTCCTTCAGAAGAGAGCCTCTTTGCTACAGGAAGACCTGGATGCCTGTCGCAGCAGGAGGTAACTATGGGAGAACCACAGCCTGACCCCATGCCGGGATATGAAGGATTAAGACGTCCAATCAGGTGTGAGCATTAGTGACTGTTACAAGTTTTTACACACCTGTCATGCAACTGGATCAATCATCTTTTGGTTTGATGTGCTGTTGTCTCTCATGGTTTTATTAACATATGAACTATTTATTCATTGTCAGATTTAAGTTTagcttgagtgtgtgtgtatatatataattctgATTACTTCgttcagttttatattttttttattgttatggaTATCATAGGCATTTAATGCCAAAATCcatcatttttaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209168 lncRNA downstream 36069 12400252 ~ 12401475 (-) True G154368
TU209165 lncRNA downstream 36113 12400252 ~ 12401431 (-) False G154368
XR_005641900.1 lncRNA downstream 63550 12361239 ~ 12373994 (-) True LOC120574757
TU209066 lncRNA downstream 253719 12183611 ~ 12183825 (-) True G154305
TU209033 lncRNA downstream 281732 12131386 ~ 12155812 (-) True G154275
XR_005641891.1 lncRNA upstream 1707 12567178 ~ 12567810 (-) True LOC120574719
XR_005641890.1 lncRNA upstream 2748 12568219 ~ 12568696 (-) True LOC120574718
TU209206 lncRNA upstream 112022 12677493 ~ 12679110 (-) True LOC120574720
XR_005641892.1 lncRNA upstream 112084 12677555 ~ 12679090 (-) False LOC120574720
TU209226 lncRNA upstream 170032 12735503 ~ 12737463 (-) False LOC120575506
XM_039825067.1 mRNA downstream 10038 12413431 ~ 12427506 (-) True axin2
XM_039824679.1 mRNA downstream 80452 12342804 ~ 12357092 (-) True tex2
XM_039825190.1 mRNA downstream 96261 12320594 ~ 12341283 (-) False LOC120574755
XM_039825189.1 mRNA downstream 96261 12320594 ~ 12341283 (-) True LOC120574755
XM_039825188.1 mRNA downstream 117280 12309749 ~ 12320264 (-) True samd9l
XM_039825577.1 mRNA upstream 129414 12694885 ~ 12727024 (-) True LOC120575015
XM_039825576.1 mRNA upstream 129414 12694885 ~ 12714698 (-) False LOC120575015
XM_039826336.1 mRNA upstream 169973 12735444 ~ 12737483 (-) True LOC120575506
XM_039823969.1 mRNA upstream 181346 12746817 ~ 12749160 (-) True LOC120574004
XM_039823970.1 mRNA upstream 181346 12746817 ~ 12749150 (-) False LOC120574004
unassigned_transcript_847 other downstream 950619 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1211998 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1300062 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641867.1 other downstream 1356938 11078587 ~ 11080606 (-) False LOC120574486
unassigned_transcript_848 other upstream 277422 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 391051 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 407861 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 769978 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1485267 14050738 ~ 14057312 (-) False med9

Expression Profile