RNA id: TCONS_00070322


Basic Information

Item Value
RNA id TCONS_00070322
length 2418
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_035867
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 38415374 ~ 38419647 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTCCAACATCTCAGGATCCTTCCTCTTTAACAACAGCTTGAACCAATTTCCGTCAGACATCAAGGCCCCGGTGTGCCAGTACTCCATTCCCAACTCCTTCTACAAGCTTGGCCCTGCCAATATCAACTCACAGTTACAGGCTGGCACTCCGCATGGCATCAGTGACATTCTGAGTCGATCCATGGTGAGCGGTCCAGGAACCCCTGCACTATTGTCTGGGTACCCATCCATGGGTGGCTTTGGAACAACTGTTCCCAGTCCGGGGGTGTATTATAATCGGGATTACACCCCATCAGGACTGAGCACTTTTCCTAAACCTGTTGTCGAATGTGCAGGTATGAAGGGTAAAAGCAGCAGCTGCTGGGTGGATGGAGGGTATGAGTGGAGAGGCGCGAGACAGCAGTGTGGCAACAATATGGGGCATAATCCTGAgaatgtggggaaaaaaaagcacacacGACCTACATTCAGTGGGCATCAGATCTTTGCTCTGGAGAAAACCTTTGAACAGACCAAGTATTTGGCAGGACCAGAGAGAGCCAGACTGGCATACTCGCTAGGGATGACTGAGTCACAAGTTAAAGTGTGGTTCCAGAATCGGCGTACTAAATGGCGGAAAAAGAGCGCAACGGAGCCCAGTTCCACACAGACCTCGCGTGGGGAGAGTGCAGGAGACGGGTCGGAAAATGAGGTGGAGGACGAGGAGTACAACAAACCTCTGGACCCCGACACAGACGATGAGAAGATACGACAGCTGCTGCGCAAACACCGCAGAGCTTTCTCAGTACTGCGCCTGGGGCCACACCATATCTGAATGCGAACTCATAATGGGACAACATGCATATCCATTAATAAACCCGGGATGTctgaaattatacaaataaacagTGATAAATAACTGTTATATAACTTGGTACCACTTTCTACTAAGCCTATTAAAAAAAGGTCTACCATTTTTGCCAAAAAAGACAACTATTATAAAGTGGTAgaaaaaaactgagaaaatgcATCCGTGAATTGGCTGCttttcgtattttgtgattcatgttttttttcttcctctttattcatgcttttgaatCGCATTATTAGACCttgatcatttttaaaaagttagaaaaggtgagttggtgttgtatattatggtagcCTACAAAAACCATGTTATATTttctgtttcaaatttatattatttcttacacatattatttcaaaatagtaaaatgtcaataaaggtcATTTAGTGAAACTgtagagtttattttaaatatcaaaaGTCGGCAGAGCATATATCAAGCtatccataatgcaattcacaatcataaataaacagacaacacaacatacggaaactgttaattaggctaacatgttttttttattgtgtaggCTAACTGGAATTGTAAATGAGGATATAGCAACTAGAAAAGGCAGATTTATTGTGTAAAAGTCCACATTTTTCACATGAGAACACCGCGGGCCGTGACAATGTGTGTCGAGATTTGCAAGTAATTTAATTCCATTTAATatgattttctatttttttatttcttatatttttatattattttatttttaacgtATGGCATAAACACACTGGTTTGACCGTTTACTGACATTTGTGAATCATTTACTCATTGGCTGTAATGAATAAAAAGCTGCAAATGAATCAAAATTCTTTCACATTTGTGAAATGTCAGGGTATACAGATATTCCCTTAATGAtgcaaaacattacaaaaaatatatattacaaatttaaaacgTGTATTATCTGTAAATGAATTATGATGGAAATGCTCAATAAATATCTGTTTTCAGTGTTGAGTTTGTCCTGTTATGTTGAAAACTACAATCTTTTTTATCCTtacatttgcaaaaaataaattttaaaatggtaaaaaattcTGCACTCagattataaaaaaacaattcgTTTTAAGCATGTTAAGATAAGGGTTTAGCTTTAGCCTCCTGTCGAAAAATGCCACTGAATGTAAAATTACCTCTGATAATTTAAAAGCAAATCAGCAAGCACTTGATTTGAAGTGGTCATTTGTCAACTGTCAACTAATGGCTCCTTTCAGACCAGTTGTCTACAGGGAGAGATTAGTCAGATCCAAGATCCTTTAATCTACATCACATAGCAGAtggttttggtgtgtgtgtgtgtgtgtttgtgtatactcATCTTAACTGCACCTCAATTAAAAGGACTCATAATGATTATGACTATGATCAATTAATGTAAACTGACTCAATTTGAAACAACTGACCAGTCATTAATCGATCTTCCCATTAATCCATTAATGCAAATTCTTAACAACAGCTGCgcaattttaaatgttaataaaagctcAGTATATTAGGATTCATAGtgtctaaaaaacaaacaaactggtcCTTCATTTTCG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070810-7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in hindbrain. Orthologous to human NKX6-3 (NK6 homeobox 3).

Ensembl:

ensembl_id ENSDART00000085395

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072246 lncRNA upstream 631333 37782032 ~ 37784041 (+) True XLOC_035865
TCONS_00072245 lncRNA upstream 1042576 37370464 ~ 37372798 (+) False XLOC_035855
TCONS_00070307 lncRNA upstream 1042576 37370860 ~ 37372798 (+) True XLOC_035855
TCONS_00070305 lncRNA upstream 1282452 37130618 ~ 37132922 (+) True XLOC_035852
TCONS_00070302 lncRNA upstream 1420098 36992272 ~ 36995276 (+) True XLOC_035851
TCONS_00072247 lncRNA downstream 200101 38619748 ~ 38620264 (+) True XLOC_035870
TCONS_00070327 lncRNA downstream 572181 38991828 ~ 38992697 (+) False XLOC_035872
TCONS_00070328 lncRNA downstream 572181 38991828 ~ 39002148 (+) True XLOC_035872
TCONS_00071958 lncRNA downstream 637241 39056888 ~ 39058948 (+) False XLOC_035873
TCONS_00071959 lncRNA downstream 637774 39057421 ~ 39058948 (+) True XLOC_035873
TCONS_00070321 mRNA upstream 465180 37919144 ~ 37950194 (+) True XLOC_035866
TCONS_00070320 mRNA upstream 466596 37905666 ~ 37948778 (+) False XLOC_035866
TCONS_00070318 mRNA upstream 643224 37755099 ~ 37772150 (+) False XLOC_035864
TCONS_00070319 mRNA upstream 656243 37755125 ~ 37759131 (+) True XLOC_035864
TCONS_00070317 mRNA upstream 660464 37749332 ~ 37754910 (+) True XLOC_035863
TCONS_00070325 mRNA downstream 145295 38564942 ~ 38573105 (+) True XLOC_035869
TCONS_00070331 mRNA downstream 1092285 39511932 ~ 39578792 (+) False XLOC_035876
TCONS_00070332 mRNA downstream 1150968 39570615 ~ 39575515 (+) True XLOC_035876
TCONS_00070333 mRNA downstream 1187819 39607466 ~ 39647216 (+) False XLOC_035877
TCONS_00070335 mRNA downstream 1199440 39619087 ~ 39643788 (+) False XLOC_035877
TCONS_00070313 other upstream 794704 37620554 ~ 37620670 (+) True XLOC_035861
TCONS_00070311 other upstream 899620 37514822 ~ 37515754 (+) True XLOC_035859
TCONS_00070308 other upstream 1032143 37383101 ~ 37383231 (+) True XLOC_035856
TCONS_00070304 other upstream 1289134 37126124 ~ 37126240 (+) True XLOC_035853
TCONS_00070286 other upstream 1885326 36529691 ~ 36530048 (+) True XLOC_035846
TCONS_00070324 other downstream 10916 38430563 ~ 38430679 (+) True XLOC_035868
TCONS_00070326 other downstream 502670 38922317 ~ 38922926 (+) True XLOC_035871
TCONS_00070347 other downstream 1383135 39802782 ~ 39816165 (+) True XLOC_035884
TCONS_00070348 other downstream 1386667 39806314 ~ 39806430 (+) True XLOC_035885
TCONS_00070362 other downstream 2513075 40932722 ~ 40932838 (+) True XLOC_035897

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000146_01096817_01098846.mRNA False 3624 mRNA 0.38 3 CI01000146 1096514 ~ 1101348 (-)