RNA id: XM_039777579.1


Basic Information

Item Value
RNA id XM_039777579.1
length 4316
RNA type mRNA
GC content 0.44
exon number 11
gene id gabra3
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26412161 ~ 26526844 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTCGAGAGCATCACTGACAAGCTGGTCGGTTAACAGTGAGCCCTCCCCGCAAACGTTCACCGCTCGGGATCAGGGTTTGCCCCTCCTGACCAGCACCAATCTGAGATGGGTAGACGGAGGGGGCGGGAAGGTTAGTTTGAAGAGGGCAGAGCTTTGCGAGCGGACGCCGATTTCCCTAATAGgctatttcaccgctggaagaaaaataaaagccaAAGCCAGCAGACAATAACAGCTGAGGGAGAAATCAGTCGGACCACACGTCAGAAGCTCATTAACTCCAAGGAAAGCCAAGTCGGCAGAGAGAGGAAACGGCAAGAACGCATCCCTTACCTACTGCTGCTGGAGTCCTGTTTGAACGGATATGGCTGCTGCACAGTGGAAGCCTAAATCACTGGACTTGGGCTGGTGGATCATTCTCCTGCTCCTCAACCTCCTTCCAGAAGCCAGGGCAGTAGTTGGACACAGAGAGCCGTTGCCTGATGATAGTAAAGACAATATCACCATTTTCACCCGAATCCTCGACAGGCTGTTGGATGGATATGACAACAGGCTACGTCCTGGACTGGGAGAGAGTGTGACAGAAGTGAGGACAAACATCTATGTGACGAGTTTTGGGCCAGTGTCGGATACAGACATGGAGTACACCATTGATGTCTTCTTCCGTCAGAGTTGGAGGGACGAGAGGCTGAAGTTTGACGGGCCCATGCAAGTTTTACCCCTCAACAACCTCCTGGCCAGTAAGATATGGACTCCGGATACATTTTTCCACAACGGAAAGAAATCAGTGGCCCACAACATGACGACTCCTAACAAACTGCTACGACTAGTCGACAACGGAACGCTGCTCTACACGATGAGGTTGACCATTCATGCCGAGTGCCCCATGCACCTAGAAGATTTCCCGATGGATGCACACGCCTGTCCTCTGAAATTCGGAAGTTATGCTTACACAAATAACGAGGTGATCTACCTGTGGACCCAGGGAGACGAGAGGTCTGTTTCTGTAGCAGAAGATGGCTCCAGGCTGAACCAGTATGACTTACTGGGACATGTTATTGGCAAAGAAACCATCAGTTCCAGCACAGGAGAATACGTAGTGATGACAACATATTTCCATTTGAAAAGGAAAATTGGCTATTTTGTGATTCAAACCTACCTCCCGTGCATCATGACTGTCATACTGTCTCAGGTCTCCTTCTGGCTAAACAGAGAATCGGTTCCTGCTCGCACTGTATTTGGGGTCACCACTGTCCTAACCATGACCACCCTGAGCATCAGTGCTAGAAACTCCCTTCCTAAGGTGGCCTATGCCACAGCCATGGACTGGTTCATGGCTGTGTGCTATGCCTTTGTCTTCTCTGCCTTGATTGAGTTTGCCACAGTCAACTACTTCACCAAGCGCAGCTGGGCATGGGATGGGAAAAAAGAGGGCATGGAAATAAGGGAACCGTTTCAGGCTAACATGGCCAGGATTAACGATATGAGAAGAGAATCGACGACCTTGTCCAAAAAGGCAAACAACACCTTCAACATTGTGGGAACCACCTACGCCATCAACGTCGCTAAAGACCAAGGTTTAACGACCATTTCCAAGAGTGCCGCTGCAGCGTCGGTCAAACAGCCCTATCTCCATAAAATGGAAGACCCCTACATGGAGGCCAAGAAGTCCTACAACCGTGTCAGCAAAGTGGACAAGATATCACGCATCATTTTCCCAGTTCTGTTCTTCATCTTCAACTTAGGCTACTGGGCCACGTATGTCAACAGAAAGCCCGCTATCATGAAGGCAAACAACTTAAACTGAATTTAGGCTTGATCTGGTTTGGAGGGTAGACAGGTTTGCAGGAGGCCAAGTCCATTACAacttattgtgtgtatgtgtgtgcgcgcgcgtttTGTGggtctgtttttttcttatgaTATGTTGCACGTCTGTTTAGATGGAaggcaaattttaacatacagtaGATTCACAGAGTAGAAGTCCTTGGAAGAAGAACCTTATCACATCAGACTGTGTTTGTGTAGCATTTCTTTTCTCCCCCTCCACACTCTAGAACTGTTCCCTGTTGTGAGTGACCAAGTCTCCCTTTCTTGATTGATCTTGATTGCTTGCCGTTTTGTAGAGTAGCCAAATTGTGGTTTCACTATGTTTTGACATGTTTGCACTTTGCTTATAATAAGTTAGAGCAAGCGTGCGTTTGAAGTTTTCATTGTAGATCATTAGCAATGATATGGTTTTCGACACATACATAAAGTTAACaacgtgcatgcatgcacgcagacacagacacacagtgacGCATCAGAAAATGCCACAAGAGCCATTTCGTCCGTTGCTTTGCCGTGCTCAGTTTGCCAGGGGGCAGCCTGTATAGTTCCATAGGAACATCATTAATAATAGTCAGTGTCTGGCCTTTAGCTTGCGCTGAATTTCAGCAGACCCAATGCAGTATCATCTGGAATTGCCATCGCGTCCCATGGGACTGCCTGTACATTTTCTAGTCTGGTGGCTCTAATTGTTTTAACTGGCTGAGTATGCTCAATGACAGAAAAGCTATGTGCCTTGGTGAATACACACATCATAAAAGGAAAAGGCTTTGACACGCTCACAGTTGCATTTACAGCACACATATGCGCAATGGTCTGTGTGTAGATTACATGCAAAAATATACTGGTGTCCACAGGCTCCGTGCACAGCAGTATGTGGCCGAGACCCACCCACCTCCGGCCCATGGGCATGGGCACAGAGTGTAAAATTGCCCATTAGTGTGGAAGGTTAACAGACCCCTGCCTGTGAGAAGTTGAAGCAAAGATTAAAAAAGGATCCAGCATAGTCCAGAACAATTATCATGTGCTTTTGTTTTGGCTCATGGTGCAGCGTCTCCATGAGCCAAGCAGTCATAACAAACTACCACCATTACCTCAGACTGAAGTCGAATTCTGAATCGCAGTTTCTTATACATTTTCCATGGAAATGCAAAGAACATTAGATGTTGTATACATTCAATCATACCAGACgctccctttctttctttaagTATATTGTGGGCAGGCACCCTGGTGCCTTTATTTATTCGTTTTCTCTGCGTCAGTGTTTTTGGCTCCATTatgatttttctgcatttctgccTTGTCATAAGCAAGATTTGGTTCATGTTGTACTTTTGCCCTTTTATACTTGATTGTGTAAAGTATATTGGTGTTGATTTGATTGTCTACATATGTCGtactgtttttgtgttttgaagTAGACAACAAAGGCCAATATGTCACAGTCACACAGTATTTCTAAACAAATTTCGGAGAATTATCATCACTGGAGACTATTATACTGCAAAATGCTCTGGTCGACACATAAAATATTCCaatcaaaaaaactaaatgtcattGTTGGGATCACACTGAAGAGCACACTAATGGTCAAATTGGTTATTTTTCAACAAGCGATGGTTTCAAAGTTGTAAATCAGATCTGTCTCCAGCTGTGGCAACTGTCTCCAACTTTAGTTCTCTTTGGTAAGGGACATCTGTATTTCGGTTTTGTGTTGAATATGGTACGTGTTTATACAGATGTTTTAGGATTCTAAAGCAAtatctgttgctttttttgccAGATGCACTCTGGATATTTTGCATTGTCTTAATTATAGACTCTTTGATGACCACTACAGTCAGTGGATTCAAACTGTATCTTCAGTGGTAAGAATAGGAGAATGAGAACTGTGTTGTGGCCTCTTTAAAAAGGTGTGTTAATAACACAAACCCTGTACAATGTATCAGTCATAGGTTAATGCATGACAATCTGTACACGTGTATGTCTGCAACCTCCAATATTGGTGTTTGTCACGGAAATAGGGCTTAGTATCAGTGTTTCTGTAGTTCATCGCAGTTAGTCATCAATTACCTACTCATAACCTCGGCAACACCTGCATAAATACACTTAAGCTTCAGTTATTTGTGCACATTGATGTGATGTTAATAATTTATGGCTGGCACAGAGCTCTGaaagtgtttttaccctcatttggtctcacacacacacacacacacacacacacgatttaATGTATCttatataatgtattttaattgtATCAGTTACACAATCTCTGCTCTTGCAGTGATTCTAAATTAGatctgggcgatatggagaaaatgaaatatcacgatattttacaaaacacctcgatatcgatactgtAGGGTTGAATATTGGCGCtgtcacaaaatatttacacaatgagatttttgacaaatactcatcagtaatgtggatactatgactaagtgggtaaaggcaaataatag

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228966 lncRNA upstream 142029 26268236 ~ 26270132 (+) True G168860
TU228909 lncRNA upstream 188716 26155320 ~ 26223445 (+) False nlgn2b
TU228925 lncRNA upstream 191298 26218185 ~ 26220863 (+) True G168821
TU228921 lncRNA upstream 194043 26214129 ~ 26218118 (+) False G168819
TU228923 lncRNA upstream 194810 26214129 ~ 26217351 (+) True G168819
TU228993 lncRNA downstream 1018 26527862 ~ 26529663 (+) False G168885
TU228992 lncRNA downstream 1031 26527875 ~ 26530158 (+) True G168885
TU228997 lncRNA downstream 6887 26533731 ~ 26534031 (+) True G168887
TU228999 lncRNA downstream 48002 26574846 ~ 26580131 (+) True G168889
TU229000 lncRNA downstream 48002 26574846 ~ 26612719 (+) False G168889
XM_039777589.1 mRNA upstream 144470 26256010 ~ 26267691 (+) True tmlhe
XM_039826382.1 mRNA upstream 208360 26200742 ~ 26203801 (+) True tmem88a
XM_039777435.1 mRNA upstream 214610 26169293 ~ 26197551 (+) False kdm6bb
XM_039777596.1 mRNA downstream 16952 26543796 ~ 26568500 (+) False LOC120544064
XM_039777595.1 mRNA downstream 17489 26544333 ~ 26568500 (+) True LOC120544064
XM_039777597.1 mRNA downstream 34853 26561697 ~ 26568500 (+) False LOC120544064
XM_039777564.1 mRNA downstream 69097 26595941 ~ 26615023 (+) True kif4
XM_039777581.1 mRNA downstream 99818 26626662 ~ 26638174 (+) True adssl
TU228425 other upstream 1996392 24410353 ~ 24415769 (+) False gab3
TU228068 other upstream 2483680 23927342 ~ 23928481 (+) True G168226
XR_005636392.1 other upstream 2496123 23841537 ~ 23916038 (+) False gria3a
XR_005636496.1 other upstream 3990107 22394516 ~ 22422054 (+) False LOC120544391
TU227214 other upstream 4267962 22141545 ~ 22144199 (+) False kif20a
TU228996 other downstream 37845 26564689 ~ 26568495 (+) False LOC120544064
TU229197 other downstream 435362 26962206 ~ 26965040 (+) False G169042
TU229198 other downstream 436897 26963741 ~ 26965040 (+) True G169042
unassigned_transcript_951 other downstream 752805 27279649 ~ 27279721 (+) True trnav-aac_10
TU230254 other downstream 3419030 29945874 ~ 29971107 (+) True G169789

Expression Profile