RNA id: XM_039777596.1


Basic Information

Item Value
RNA id XM_039777596.1
length 1721
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120544064
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26543796 ~ 26568500 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAATCACAAATCAACGCTTCAGCAAGATCTTCCTGCTGGCCTGCCCGCCATGTAAAACAGCAATGGTTGTATTTAGgctgCAGGTCCACATGCTGAACGGTGCATTACTGGCTTTAATGTTCCCTGTAGTCAACACTAGACTGCTACCGTTTGAGAAGGAGATCTACTACATCCAGCACTCCATGCTGTACCTGGTGCCTCTCTACCTTTTCAGGAAAGGAGGTGTGTACAAGCCTGAGCCTCTGGGGGACATGTGGTGGGCGCTGCTCTCCAACGGCATCCTGTTCCTCTACCACTTCCTCTTCTTGCAGGTCCTCGGCCTGGCAACTGAGGTCAACCTGAACAACATGCTGTGCCCGGCCGTGTCCGATCCCTTTTACGGGCCTTGGTACCGGGTGTGGGCGACGGGCCACCAGACCCTGCTGACCCTCGCGCACGGGAAGGTCCTCACACTCCTCTCGCAACACACGGGCTCCGTGTGCAGGTGGCTGCCGGACACGCTTCGACTGCGCAGCAAGAAGGTGGACTGAATGTCCGCGGGGGAAGCACACAGACCTAGCCTTTCATTCCAAATGCCTGCTTTTCatggatttttcttttgttttcaaaatcCACATTTTAAAGCATCTTTTAAGACTTACCATCCGATTTACTGAAACAAGCGAGCATTTCAGGGCCAGTGAATCAACGTGTCATTATTTTAGTGTTGTAGTTGGCTTGCATACATACTCGCATGTACAAACATAATAGGCATTTTAAGGCTGGTAGTGAGCCTTGTGGAGTTGGGCTGACTtagcctttttcttttctttttttttttttcctttttggaaTACAGTTCCCAGGAACGTGTAAGTGAATTTGTGGGGAGATTTCTCAAGCTGcctttttgtaaatgtaaagttTTAAGGAAATGGGAGTCACGTCAATACTGATCTTTCAGGTCATTACGTAGTAGTTATGCAAGGTCATAATATTAGTGGCTAAAGTGGccattttgtttgtctgtgctgTTTGGAAACAGATTGTGAATGTCAGCTGTTGTAAAAGGCATTGCTTGTTTAATAGtcgttttttttagtttgtcaCGTATGATCACTTTTCAGTGTTGTCACGACTGAAAATGGAAAAGTTATTTATGGCGTCCCTCTGTTCCCACTTTACTACACACATGTACAGGGTATGAACGCATTATTAGCAGCCTCATTTGCGTTTCTGTCCCCAGCCCGTTCAGATCATTCCAGTTGTGATAATCAGGGGACATGGGGGACGAATAGCGTGCTGAGATTCACAGTGATGGATGAGGATTTATGGATGGATACACTGGGGTGGTGTTATTACCtctgccaaggaggttatgtttttgtctgttattttgttttgatattggACCATATTAAATAGGGTATCAACTTCACGTGTCGTTGGAATGAATATGATGTTTGCCGAGAGAGAAGATCTTGACCAAATATGTATCTCGGCTGGACTTGTGCACCATGACACTTGCTCGATTCTCAAGTATATCTTACAAGGCATTCTGGGGTTACTTACCTGTCGAAAGGAAAAAGTCGGAATATGGCAAGTGTTAGGGGTGTGTGTATTACTGTAGCATATACGTACTGTACTTCACTGTAAAGAAGGGATGAGACAAACTTTTGTAATTCTATGGGTTCGAGTGTATGTGCTGTATTGACAATAAAAGTGATTTCAGTTGACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228997 lncRNA upstream 9765 26533731 ~ 26534031 (+) True G168887
TU228992 lncRNA upstream 13638 26527875 ~ 26530158 (+) True G168885
TU228993 lncRNA upstream 14133 26527862 ~ 26529663 (+) False G168885
TU228966 lncRNA upstream 273664 26268236 ~ 26270132 (+) True G168860
TU228909 lncRNA upstream 320351 26155320 ~ 26223445 (+) False nlgn2b
TU228999 lncRNA downstream 6346 26574846 ~ 26580131 (+) True G168889
TU229000 lncRNA downstream 6346 26574846 ~ 26612719 (+) False G168889
TU229072 lncRNA downstream 51025 26619525 ~ 26619773 (+) True G168940
XR_005636437.1 lncRNA downstream 54270 26622770 ~ 26624506 (+) True LOC120544072
TU229088 lncRNA downstream 98328 26666828 ~ 26675795 (+) False esrra
XM_039777579.1 mRNA upstream 16952 26412161 ~ 26526844 (+) True gabra3
XM_039777580.1 mRNA upstream 16952 26412161 ~ 26526844 (+) False gabra3
XM_039777589.1 mRNA upstream 276105 26256010 ~ 26267691 (+) True tmlhe
XM_039826382.1 mRNA upstream 339995 26200742 ~ 26203801 (+) True tmem88a
XM_039777434.1 mRNA upstream 346245 26169293 ~ 26197551 (+) False kdm6bb
XM_039777564.1 mRNA downstream 27441 26595941 ~ 26615023 (+) True kif4
XM_039777581.1 mRNA downstream 58162 26626662 ~ 26638174 (+) True adssl
XM_039777578.1 mRNA downstream 71816 26640316 ~ 26653943 (+) True LOC120544052
XM_039777587.1 mRNA downstream 90858 26659358 ~ 26675702 (+) True esrra
XM_039777588.1 mRNA downstream 93888 26662388 ~ 26675702 (+) False esrra
TU228425 other upstream 2128027 24410353 ~ 24415769 (+) False gab3
TU228068 other upstream 2615315 23927342 ~ 23928481 (+) True G168226
XR_005636392.1 other upstream 2627758 23841537 ~ 23916038 (+) False gria3a
XR_005636496.1 other upstream 4121742 22394516 ~ 22422054 (+) False LOC120544391
TU227214 other upstream 4399597 22141545 ~ 22144199 (+) False kif20a
TU229197 other downstream 393706 26962206 ~ 26965040 (+) False G169042
TU229198 other downstream 395241 26963741 ~ 26965040 (+) True G169042
unassigned_transcript_951 other downstream 711149 27279649 ~ 27279721 (+) True trnav-aac_10
TU230254 other downstream 3377374 29945874 ~ 29971107 (+) True G169789
XR_005636422.1 other downstream 3442834 30011334 ~ 30112211 (+) False uvrag

Expression Profile