G168226 (thoc2)


Basic Information

Item Value
gene id G168226
gene name thoc2
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23927342 ~ 23928481 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228068
TCCGATTCGGCTGACTCCGATCTGGGAACTGGTGACTTGAGGGACCCGGCCACAgctcctctgtctcctttctCCTTGCTCTTGGACTCCTTGATGGCATCGCGATCCCTAGACGGCTCCATGGGCTCCCCGTTGCCGGCTTTGGCCTTGTCGTCTTTGCTGCTCTTCTCCTCAGCCTTCACTTTCTCCCTGTCTGCCTTGGGGGTCTTCTCCTTACCCTCACGTGCCACCCGCTCCTCCTTCCCTGCTCTCTCGTCTCTCTGCTTCTCCCGACGGTTCTCCGCCTTGGTCTCAGGAGTGCTGCCTGgtgtcttttcctttttctcttttttctccttcCCACTTTTCTCTTTGTCGTCTCGTTCTTTAATGGCTTTGGTGCTGTTAAGAGCACCGTTCCCATTGCTGGTGGTCACTTTGGCTGCTGCACTGTTGGCTTTGTTCACTGGCTTTGTGGTCCCCTGAGATTTATCCTTGCCCCGATCACCTTCCTCTGACGTCCCCTCCTCGGTCTTGCTTGTGCTGGTGGCAGGCTTGCCTGTGCTGCCTGGGCCGTTCTGTTGATTGGCAGGTGTGGCACTGCGTGCTGGCTGCTCTTTGTGGTGAAACTCATTCTCGGGGACCATATGCACCTTCTGGCCTTTCAAC

Function

symbol description
thoc2 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of THO complex part of transcription export complex. Human ortholog(s) of this gene implicated in X-linked intellectual disability-short stature-overweight syndrome. Orthologous to human THOC2 (THO complex 2).

NR:

description
PREDICTED: THO complex subunit 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228068 True 648 TUCP 0.56 3 23927342 23928481

Neighbor

gene id symbol gene type direction distance location
cchcr1 NA coding upstream 100628 23816480 ~ 23826714 (+)
si:dkey-125i10.3 NA coding upstream 139719 23776894 ~ 23787623 (+)
LOC120544379 NA coding upstream 192934 23731626 ~ 23734408 (+)
LOC120544661 LOC103367246,LOC104954666 coding upstream 216907 23707871 ~ 23710435 (+)
LOC120544660 lpar6,LOC104954664,LOC103367244 coding upstream 221382 23703829 ~ 23705960 (+)
LOC120543788 NA coding downstream 54269 23982750 ~ 23985605 (+)
arhgap35b LOC103363264,LOC103395548 coding downstream 73506 24001987 ~ 24013170 (+)
pafah1b2 pafah1b2 coding downstream 172683 24101164 ~ 24106620 (+)
LOC120575597 rab6a coding downstream 227969 24156450 ~ 24165927 (+)
dnajb13 dnajb13 coding downstream 238548 24167029 ~ 24171242 (+)
G168218 nlgn3b,LOC104954573,LOC103367236 non-coding upstream 124533 23800822 ~ 23802809 (+)
G168217 NA non-coding upstream 129035 23790798 ~ 23798307 (+)
G168207 NA non-coding upstream 163210 23763501 ~ 23764132 (+)
G168205 fam76b non-coding upstream 167103 23756043 ~ 23760239 (+)
G168195 NA non-coding upstream 183979 23742131 ~ 23743363 (+)
LOC120543877 NA non-coding downstream 16937 23945418 ~ 23949105 (+)
G168291 LOC104954468,LOC103363262 non-coding downstream 57201 23985682 ~ 23986537 (+)
G168301 NA non-coding downstream 85253 24013734 ~ 24013946 (+)
G168311 dscaml1,LOC107087877,LOC103395551,LOC106534979,LOC108247600,LOC105929366 non-coding downstream 104280 24032761 ~ 24033218 (+)
G168318 NA non-coding downstream 161794 24090275 ~ 24093799 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 8865 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1281516 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 1505288 22394516 ~ 22422054 (+)
kif20a kif20a,LOC102778170 other upstream 1783143 22134507 ~ 22144199 (+)
sms sms other upstream 2079244 21823653 ~ 21848098 (+)
gab3 NA other downstream 481824 24410305 ~ 24420345 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 1057984 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 1910923 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 1939673 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 2071582 26000063 ~ 26223445 (+)

Expression


Co-expression Network