cchcr1


Basic Information

Item Value
gene id cchcr1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23816480 ~ 23826714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778401.1
TTCCCGTGATGCACTGCGCGATTATAATGTGTGGCAGTTATGTTCGATAACGTACATTATCATTTATATTAGCTTCCTAAACATACGTGTTTTCCGGGATGCTTCGggtattgtaaataaattaaGCATCAAAAATTGGCTAGCTGAAAAAGCCCGGAGTTTAACGTTGTAACGTTAACCCGTAACTAAGGCAACCACGAATAACATGACTCGCTTGTGGGAGAATAACTCAAAAACAGCACCCATATAGctgtttagctagctagctatatacaAGCTGTTTAGTTTATGACTTACATTCACTGCTTGCAGTAATAGtttaacgctaacgctacgtgTGTTGATCATGGAGAGACATAATGTGGGAAAAGAAAGGCTCGTAGTACCCACTGATTTTACCTCACCAGCGGTTTCAAGTAATATCCAGGAAGATCTGGTACCTCCATCGCATTTCGCGTCAAGTGTCCAGTCTGCTGGAGCACACAGAGGCGTTCAAATCACAGGGACACTGCCACCCATCTCCTGGATAAACCCAGGTGTAACATCAGTTCCATCAGGGGATCCCAGTCCTGCCAATCCATGGCTTGCCATCACTCAGGCCCAACAGGAAATATTGGAACTGAGGAAGGAAAATCAGAGAATCATGATGATACAAGGAGACAGCATAAGAGGAAGGATTCCAATGGATCACCCATCAGACCATAGGGCAAGATGTGCAGAGAGACATGAGCAGTGGTCCAGATGGGAGTCAGAGTGGCGTCTGGAGGCAGAGAAGCACAAGGCTGAAGCTGAGAGGTTGAAGGAGCAGGTGGAGTCCCTGAAGGAGACTGCAGGGAGACACAGGGAAGAGATGAGAGACAGAGGCAGCACTCAGAACAGACAGAGCCATGAGTTGGAAGCAATGCGTGAAGAGCTATGTAAGGCTAAGACTGAACTCAGCCAAATCAGAACGGAGCTCACTCACAGCAGTGCGgaaaaggagaaaataagctCACAGCTTGATAGACTAAAGAGAGAGTCGGATGAGGAAATTACAAAGCTGAGGAGGGATGTAGCGAGGAGCAAAGAGGAAGCCCAGGAGCTCGCTCTGAAGGCTGAAATGGGCAGGTTACAAGCTGCGGAGGAGGCCAAACAGCAGACTATAAGACTGTCAGAACAATTGGAGAAAATGCAGAAGAAGCAGGAGGTGGAGctgCAACAGTTGAATGCTTCCCACTGTGCAGAGGTGGGTGCAGCAAGAAATACAAACAGTGATCTACAGGACAGACTTCAGTCGATGACTTCAGAAGTGCTGCAGCTAAAAAGCGCTCTGCTGGAGGTATCtactgagagagacaggctaAAAGAACATTTAAGCCAAATGGGACAAGCTTTTGAGACACAATCAACAACGCTGCACAGCCTCAGAAATTACATCGGCCAGCTTGCcccagagagagaaggagagaaggaacAATTAAATAAAGCTGTTGAGAAGCTGAACACAGAGAAAGCAGCTCTTCAGATGACCACAGAGCTTTTGACAGTCAGGCTCAACTCTGTGAGTGAGATACTTGCCCTCCAAGAAGAGAAAATAGTGAAGAAGtCCTCGGCAGACCCACTTGTGAAGAATGGATGTGAAGGTCTTCAAGTGCTTCAGCTCTGGAGAGACAAAGTATTCAAGTTATGCGTCCAGCTCCGCTCAAAGGACATCGAACTAAGAGGAGAGAAGGATAAACTTCTTTCAACAGTCAGATTCAtggagcagcagctccagcaggagcAGCACCGGGCTAATGTGCTCCAACACAGTTTAGATGACAAGATAGCTCAGCTGGAGCTGGAGAGAGTGGAAAAGGAGACATTGATACAGGACATGGCCCAGGAGCAAAAGGAAAACTCACAGCTAAAGTCACAGAGCCAGAAAGAAGAGGCTGAACTAAAAATCCTGACAGAGGCCGTCACTAGGTTTGGTCTGGCATTTGAAAGCAAGGTGGCAGAAGTAGACGCAGCTCAAGCAAGGCTCAACACTTTCACCCAGAGGCTAACTTTTGCTAAGAGACGCATAGAGACTATCCAAGgttTGATTATGAGGAAGGTTGCTCTGCAGAAAGTTCAGCAGGCCAGTAAACAGACAGAACAAGCTGCTGACAGCCTCACAAACATTCAGACAGAGCTTAGTTTGGTGTGCGAAGAGAGAGACAAGCTCACACAGGAGCTCAAAAGAACCCCGGAGCTCATCGGGAAAGCTTTGGCTGATCTGAAAGAACAATATGAAAGCAAACTGAggcttcagcagcagcaggcgcTGGAGCAGAACTGGGTGGAGGTCCGGCAGGCTGTGGCTGGCAGAGAGGAGGCCGAGCAGAGCCTGCAGCAGGTCCAGGCCCAGCTGGAGGAGAGCAAGGTCAACCTGGAGAAACTCCGCTCTGTGCTGCATAGCCAGCAGGAGCACAGTGAACGTGCTCTGCAGGAGAGAGTGTCTGAGATCGAGGACTCCTGTGCTAAAAAGCTAAGAGAGATGGAGGTTCAAGTCAATACTGCCACGAGAGAGCACACCAAAGCAGTTATGACTTTGCGGCAGTTTGAGAGAGAGGCAGCAAGGAAACAGGATGAGATGAGAGAAACTCAACAACACACAAAGAGGGAAGTCCGGAATAAGCAACTGAAGGAGATGGAGAAAGACAAACAAATACTGCTGGCCACTGTTGCTGATAGAGGGCTGACAAGTGAGTATACAAGAACTCACACAACAGCTCTACAAAACTCTGCTGTTCCCAGAAAACATCGCGAAAAACCCTCAGAGAGCAGTCGCTCTGTGGGAACAGAAGTCCAAGTACCTGCAGCTGGGAGACTCCTGTCTGTTTTGGAGGAGCTCCATTCTCTCAGTGCTGCTGTGATAAACAGCTCTGAGGACTCTGCggaggaggagggacagaaTGACAGCGTGGGACCATCCACTGGCAGTCTGCACAGCTGATACCTCATGATGACTCACTCAGGAGCCAGTGAACACACCTTTCATTTGTACAAAAGGTGGGCAGTGTTGAAAACCTACATTCAGTGGAAACAATTAGTTTGAGCCAAACATCAGAAAACCACGCATGTCATATTGCTACTGGGTGTATAAGAAGAATGATAGCTATGACACAGTATGCTTGAATATAACACAAATGTAAATTTAAGTTTATACAATTCTTCCACTATGTTTACAAAGAATACTGGAAATACATTAATGGACAGATTTGACTCAAAAAGTGGTATGAAAGGTTTAGATGTTTATGTGAATATCTAGGGTTTCAGTTGCAGAATAATCTGGTTTTTCACTCTTTTGCTTGGACTAAATCACCTCACCAGTAAGACCACACTTTCATATATTTTAGATggttaaataatatttttctgAAACTTGGCCCCATAATTGTTCCCATTGAATCAATGAAATGCTTTAAAGTTTATATTTTGACTGCATGTAGAATAATATAATTAATGACAAATCACTGGACAGATGATGAAGGCTTCAATAAATGCAAATATGTGACTACTAGATTTGTCAGTTACTGTGAGCTTTTTAGCAGGTAGCAAAGAATGCTAATGTGCATGGAAGTCTGTTCTGTTGACTTTGATCCTAGAAGTTTATGTGATTCTTCGTTACGTAGAATTATTTGTTATGCAGAAACGTGTATCTTACTTTTCGGTGTGAGTTAATAAAGTATTTTTATATTGCAA

Function

NR:

description
coiled-coil alpha-helical rod protein 1-like isoform X2

GO: NA

KEGG:

id description
K16760 CCHCR1; coiled-coil alpha-helical rod protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778401.1 True 3708 mRNA 0.45 19 23816480 23826714

Neighbor

gene id symbol gene type direction distance location
si:dkey-125i10.3 NA coding upstream 28857 23776894 ~ 23787623 (+)
LOC120544379 NA coding upstream 82072 23731626 ~ 23734408 (+)
LOC120544661 LOC103367246,LOC104954666 coding upstream 106045 23707871 ~ 23710435 (+)
LOC120544660 lpar6,LOC104954664,LOC103367244 coding upstream 110520 23703829 ~ 23705960 (+)
LOC120544654 LOC100694900,LOC107098236,LOC101481005,LOC102776621 coding upstream 130948 23680087 ~ 23685532 (+)
LOC120543788 NA coding downstream 156036 23982750 ~ 23985605 (+)
arhgap35b LOC103363264,LOC103395548 coding downstream 175273 24001987 ~ 24013170 (+)
pafah1b2 pafah1b2 coding downstream 274450 24101164 ~ 24106620 (+)
LOC120575597 rab6a coding downstream 329736 24156450 ~ 24165927 (+)
dnajb13 dnajb13 coding downstream 340315 24167029 ~ 24171242 (+)
G168218 nlgn3b,LOC104954573,LOC103367236 non-coding upstream 13671 23800822 ~ 23802809 (+)
G168217 NA non-coding upstream 18173 23790798 ~ 23798307 (+)
G168207 NA non-coding upstream 52348 23763501 ~ 23764132 (+)
G168205 fam76b non-coding upstream 56241 23756043 ~ 23760239 (+)
G168195 NA non-coding upstream 73117 23742131 ~ 23743363 (+)
LOC120543877 NA non-coding downstream 118704 23945418 ~ 23949105 (+)
G168291 LOC104954468,LOC103363262 non-coding downstream 158968 23985682 ~ 23986537 (+)
G168301 NA non-coding downstream 187020 24013734 ~ 24013946 (+)
G168311 dscaml1,LOC107087877,LOC103395551,LOC106534979,LOC108247600,LOC105929366 non-coding downstream 206047 24032761 ~ 24033218 (+)
G168318 NA non-coding downstream 263561 24090275 ~ 24093799 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1170654 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 1394426 22394516 ~ 22422054 (+)
kif20a kif20a,LOC102778170 other upstream 1672281 22134507 ~ 22144199 (+)
sms sms other upstream 1968382 21823653 ~ 21848098 (+)
LOC120544341 LOC108236972,LOC106514048,LOC103368261 other upstream 2045726 21764201 ~ 21770754 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other downstream 14819 23841533 ~ 23918477 (+)
G168226 thoc2 other downstream 100628 23927342 ~ 23928481 (+)
gab3 NA other downstream 583591 24410305 ~ 24420345 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 1159751 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 2012690 25839404 ~ 25846377 (+)

Expression


Co-expression Network