G168218 (nlgn3b,LOC104954573,LOC103367236)


Basic Information

Item Value
gene id G168218
gene name nlgn3b,LOC104954573,LOC103367236
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23800822 ~ 23802809 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228043
CCCACTCTTGGCGAAGTTGGTCCAATAAGTCATAACCACAGCGCTGAGCATGATGTCGTTCCTGGAGAAGTTACAGGGGAACAGGTCAGTTGGGCCCACCATGGGGATGCCAAACACATAAGGCACCTCATCTCCGTGCGCTGAATCCGACCACACTGGCTTCATGAGGCTCTGGCAGTGGTGGTAGAAGGCGTAGAAGTATGTAGGCGACCCATAGCGGGCGTGTAGGTCAGCAGTTACCACTGAGGGCTCAACCCATTGGTGGTCGGTGAAAAGGGCCACAAGGGTCTTCCTCCTGGTCTCTGGATTGTCCTTGTCAGCCCAGTCTGTGTACATGAATTTAATTGTCTCCCTCAGTGTGTCCTTCCCTTCTGGGTAGCCATACAAACTGTCCACAAAGTCTGACACTGCAAAGTCAAAGTCACTGCCAGACACGCCGTCCTCCAGATCCATCACGTTCTCCACAAAGCGCAGGCCTTCTCCCTGATTAACACCCAGCATTATATCGTAGTTAAGGAACTCGCCCTGCTCCATCAGGATCTCTGGGTCATCCGGGATGACGTCTCCGTCAATGACAGGACCAAAAGCGACGCGGTATCTGGCAGGTTGGATGTCTTGCTCCACCAGCTCCCTTGCACTCTTTTTCTGCAGGCAGGAGACCATGTCCACAGTGTCCAGCACATTGCAGCCAACCCTCTCGGCCAGCATGCGTAGTGTATTGATGGAAATTCAGAACAAAAAGACACAGAAGGCAGCAGAAGCCCAGAGAACAGTGGTTAGTATTAGCGATCTTTTTCAGCACATACCTTAAGAGCATTTAGAACTGCCCTAACAAATATTCACTTTACACTTATTGATATTCACAATTAAATCCAAGGTTTGTTGACACACAACATTTAGGTAGATAAAAGCAAACAAGCCCACGTGCAATGTTCTTTAAATACTAGCCAGGGAGATAAAGCATTAGAGTAAAAAGCGAGTGAAAAGGCCAGATTGAGCCTTGCTGATGAGaagctgctcagtaaagcagcTGGTGGAAGAAATGAGCTGCTAATGGGATGTTGTcccattttattgttattataatgATAAAGAAACCTGACAAAAAGACTTGCTTTCCTCTGTTTATCAAATTAATGATCAATTTGCAGCATTGTTTCAGTGTGGAGGTGTTTAGTTTTCCCTACACCAGTTATTCACACACGTATACTGTAATTGTACAATTGTCATTCCTGTGTGACTAACAAGCTGCATAGCTTACATATGGACTTCTGATGCCAACTGTGCAGTGGAGAGTCTGTGCAGGGAGCTGAATATGCAGTAACCCTGATCCTTCAATGTTGATACAGTAAACACGATGCTCTTTTCAATTGTTTATATGCAGTGCGTCACCTCTGTCTCATGGGATTTTGTATCTACCACCTAAAAATGACAAGTGATATGTATCATGTCAAAAAATACTCTGCTGGGGTTAAGGCATAGCAGTGCAGGAAAAAGAGTGAAGGGACAGTGTCACTTTCCCCCTCCTTTGCTGTcatttatttcaattttattttagggCAACAGCTAGCTAGTCTTCTTCAAAGACAGCCGGAGGTCTTGGTGCATTCTCTGCAGCCGAGCTAGGGCATCAAATACAAACCTCACAAAGGACAGTTGTCGCAGCCTCCCTGGCATTGATGAAAACACAATTTGTGCCCTTCTTGTGATTCTGTCCAGCATCAATGGGGTGGGCCGGGGCAATAATACGGCAAAGATAATACGTTCAATTCCCTGTGGGTCATCCATTTTGAAATATGCACCTTTGATTCCTGCAAGGAGCTTTGGATAAGTGTTTACCAAATTGCATGATATccactgaaaagaaaagtgGATCAGACACCTTTTTTCCTTTGTGTATACTCTATTTTAATTGAATTCATATTAACTTATATTATCATTTCAAAAATGATACAGTTGATAGCATGAATTTGTAGTGTAAACTGGAC

Function

symbol description
nlgn3b Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; gonad; heart; nervous system; and swim bladder. Human ortholog(s) of this gene implicated in Asperger syndrome and autistic disorder. Orthologous to human NLGN3 (neuroligin 3).

NR:

description
PREDICTED: neuroligin-3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228043 True 1988 lncRNA 0.45 1 23800822 23802809

Neighbor

gene id symbol gene type direction distance location
si:dkey-125i10.3 NA coding upstream 13199 23776894 ~ 23787623 (+)
LOC120544379 NA coding upstream 66414 23731626 ~ 23734408 (+)
LOC120544661 LOC103367246,LOC104954666 coding upstream 90387 23707871 ~ 23710435 (+)
LOC120544660 lpar6,LOC104954664,LOC103367244 coding upstream 94862 23703829 ~ 23705960 (+)
LOC120544654 LOC100694900,LOC107098236,LOC101481005,LOC102776621 coding upstream 115290 23680087 ~ 23685532 (+)
cchcr1 NA coding downstream 13671 23816480 ~ 23826714 (+)
LOC120543788 NA coding downstream 179941 23982750 ~ 23985605 (+)
arhgap35b LOC103363264,LOC103395548 coding downstream 199178 24001987 ~ 24013170 (+)
pafah1b2 pafah1b2 coding downstream 298355 24101164 ~ 24106620 (+)
LOC120575597 rab6a coding downstream 353641 24156450 ~ 24165927 (+)
G168217 NA non-coding upstream 2515 23790798 ~ 23798307 (+)
G168207 NA non-coding upstream 36690 23763501 ~ 23764132 (+)
G168205 fam76b non-coding upstream 40583 23756043 ~ 23760239 (+)
G168195 NA non-coding upstream 57459 23742131 ~ 23743363 (+)
G168168 NA non-coding upstream 63751 23674337 ~ 23737071 (+)
LOC120543877 NA non-coding downstream 142609 23945418 ~ 23949105 (+)
G168291 LOC104954468,LOC103363262 non-coding downstream 182873 23985682 ~ 23986537 (+)
G168301 NA non-coding downstream 210925 24013734 ~ 24013946 (+)
G168311 dscaml1,LOC107087877,LOC103395551,LOC106534979,LOC108247600,LOC105929366 non-coding downstream 229952 24032761 ~ 24033218 (+)
G168318 NA non-coding downstream 287466 24090275 ~ 24093799 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1154996 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 1378768 22394516 ~ 22422054 (+)
kif20a kif20a,LOC102778170 other upstream 1656623 22134507 ~ 22144199 (+)
sms sms other upstream 1952724 21823653 ~ 21848098 (+)
LOC120544341 LOC108236972,LOC106514048,LOC103368261 other upstream 2030068 21764201 ~ 21770754 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other downstream 38724 23841533 ~ 23918477 (+)
G168226 thoc2 other downstream 124533 23927342 ~ 23928481 (+)
gab3 NA other downstream 607496 24410305 ~ 24420345 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 1183656 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 2036595 25839404 ~ 25846377 (+)

Expression


Co-expression Network