kif20a (kif20a,LOC102778170)


Basic Information

Item Value
gene id kif20a
gene name kif20a,LOC102778170
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 22134507 ~ 22144199 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU227214
gaACCTGCGCCAGCTGCGCCTGGATTTGCAGAGGCTCGGTGTGGACCTGCAGTCTGGTGAACGAGCCTGCTGTCGCAACACGGGAGGGGAGAGGCTGCGGCAGGCACTAACAGCTGCAGATGAGAAACTAGCCAAACAGGACCAGATCCTATTGGACCTCCAGAATGGCCTGATGCTTGTAAAGGCTGACTTAAGGCGGAAAGCGGAGACCCTGGCCCAGACACAGGCCTTCCAGCCCCAGCTTCCCCCCTCAGGCTCTGTTGCCTCCGGCACACCAGGCTCCTGCAAGAAAAGGGGCTGTGGGGCCGCTGCACCAAGCGACACAGAGAACCGCCCTCCAAATAAACGGCCCTTTTTCCCATCTCTGTTCCCGACGCGTACGCCAACACGTAAAAACATTCGCGAAGAAGCAAATGTTACCCCTTACTCACGGATCTTGCGGTCTCGCCAGCAGTCTCCACCTCCCAGCCCTGTCCCCACCCCACGTAGTCTCAGGGGGAAGTACTGAGCTTTTTGGAGCGTGTCTCCTCTTCAATattatgcacaaaaaaaggttttatttgcCGGTAACTTTATAGTATTTTTATATTGCTTTGTatatattcacttttttttttttgcagtgcaaTTAACTCACTGTTGTCATGCCAAATACATGTATGATGTTCATGCCTGTAAAACTGTTATGCTTTAAAGGGTAGTTGACTACTAAGGGCATTGAGGTGATCTTGAGCAGTAACGTAATCAGTGGCTAATAGCTATGGTCTGTATGGGAAGaatagtgcatgtgtgtgtatacacccTTCTCTTCTGCTGTAAATACTTTTCTACAATAAAATCCATAGAAACATTGGTTTGAGTAGTCTAAGCACTACAGCAAAATTTTCAAGTACTGTACACCATGAAAGTAATTTAACAAGTATGCTTTAAACTATTTAAATTTACAGGCATAACTGCAAGTCAAAACATGTCTGTGTGCTGTCTTTGTTCTACCCTTGTGCAGTTCAAGGTGTACCTTCTTTACTCTGATggagctgtgtgtttttgttccaCTGTTAAACTAGCCTTGAATTATACCAAATCTGCATGTGTATTAAATCTATTTAAAAACCTTATGTAATCTGTTCACTAAGGTATGTACATCAGGCTAACCATCCCCAGCACTTATTGCCATGctttgattattttttacatttgcgGCATAGAACTGTCTTATCCTGGACAAAAATGATTGCAAATTTTACAAACATGTTACTTTAATGTCATTAACAAATCTATGCGTCGACAAGTAAATCCTTCCAACACTTCGGCAAACCACCAAGCGGCTGGATACACAAATTGTCCATTTTAAAGCCAGTGAGTGTCAGGGTGTAAAGGAGATGAGGTTCAGTGGAGACACCCTCCTGACGGGAGTGTTGTTGTTTGAGAGCGGAGCAAACAGATCTGCTGATGGTGTCTCAATCTGATCTCTGACCTGTGAAATCTGCCTCAACAGAGCCTTCCCCTCTTCGCGAGCCTACGAGCAGAGTGACGATCGACACCAGTTAGTATGTTACTACTTACACAGCAACTAGAacacagtgctcacattatgcagtagggctgcacgaatatatatatttttgttatcgcaatatcaactggcacaATATACACATTGTGAAAAGCTGCGa
>XM_039778259.1
GCATTGTTCAAAAACCAAACGCAGTCGGGGAAAATAACTCAGCTGAGCCTGCTTCGAAATCGGAATGAAGCAATAGTTTCAGTTAACTTTGATACAGATTTAACTCAGTATCTTCGTTTTTTTCAATTACTTGAGTTTTGGCGATCTACTCAGTGAGTTAAATTTAGTTAACCAGGCGCTCATCGCACTTTTGAGGTAAGCATGGCGCTGTCTTTGTCCTCCCCGTCTGTATGCCCCTATGATGAGGATGAGGAAGTGGCTGTGTTTGAGTCTACGGCAGCAGAGCATGGAGGCCTGTCCAGACCACGTCTGCCTGAGATCTCTGTCATTTCCCCCGGCCTGGACACCCGGCCATCCATTACAGAACCGAAACTAGCAGTGAAACCTGCAGCTGTGAGACAAGGTAGCCGTGATGAAGGGAACACAGAGAGGGTGAAGGTTTTTCTGCGCATCCGGCCACTTACTGAGATGGAGAATGTTAGGGGAGAAGAACAGGGTTGTGTGGCTGTCCAAAATGAAGAGACTCTGCTGCTCAAAGCTCCAAAAGAATCTCAGAACATGAGGACCGCAGAGAGGGGCATCACCCAGAGCATGCACAAGTTCAGTTTCTCGAAGATTTTGGGGCCAGAGACCACACAGCAACAGTTTTATGAGTGCACGATGAAAAAGATGGTGAAAGACGTGCTTCAAGGAGAAAACCGTCTCCTCTACACTTACGGTGTCACCAATTCTGGAAAGACTTACACTATTCAGGGCACTGGTCGAGAGGCAGGCCTCATTCCCCGGGCTTTAGCTTCTCTGTTCAGGAAACTGCAGGGCCGTCTCTATAGTGCCATGGACCTGAAGCCTATGATGTATCAGGATGTGAGACAGCTTGACTCCGGAGAGGTCAGGGTGGAGGAAATCCGCAGAAACTCTCTGCTCAAAGagGATGAGAATCAGACTTCTCGTCGAGGGGGCACCACTACAGTCTGGGACAGCGGCATTGGAGGACTCTCCTCTACAAGTAACCTTGCCACCCAGCTTGATGACACCAACAGTGTTTGCCTGGAGCCTGACAGCCTTTCACACAGTGGAGGAGATGATCTGGAGGAAGGGGTGCAGTTTTCTATCTGGGTGTCCTTCTACGAGATCTACAATGAGTTCCTGTATGACCTACTGGATGCTTCGCCCTCCCTGCAGCCCAGAAAAAGGGTTACACTGCGGCTTAGTGACGACAAGCAGGGCAACCCATATGTGAAAGACCTCGCCTGGATCCAGGTCCGCAGTGCAGAGGAAGCTTGGAAGATTCTGAGGGCTGGACGTCGTAACCAGAGCTTCGCCAGCACTCACCTCAACCAAAACTCCAGCCGCAGGTAGGAGCACATTCAACTTTTTACCGTGTCTTGCACTTTCTCCTTTTTTAGACTGACTGTGTGTGATCTTGCTGGGTCTGAACGCTGTAAAGAGCAGCGTAATGGTGAGAGGATGAAGGAGGCCAACAACATCAACACCTCGCTTTTAACACTGGGACGCTGTATTGCTGCTTTGAGGCACAACCAGAACAACAAATCGCGACCCCCTCAAGTGGTGCCCTTCAGGGACAGTAAACTAACCCGGGTCCTGCAGGGTTTCTTCTGTGGCCAAGGAACCTCCAGCATGGTGGTCAACATCAACCCGTGTGCCTCCATCTATGACGAGACCCTCCAAGTCCTCAAATTCTCAGCTATTGCTACtcaaCTGGTCCATGGCCCGTCCACAAAGACCAGAGTGGCCTACATCCTGTCCCTACTGCGCGAGCCAACAGCAAACGGTAACGAAAGCACAGTGACTGAAGACGAAGAGGATGAGAGTGATATTGAAGACGGAGATATCACCATGTTAAATACTGAGGCTTTGCTGCAGGCCATTGATGTCCTGAAGAGAGAGGTCCAGCGCCAGCGGGAAGAGAAAGAGGTCCTTGAGGCAAATGTGAGAGAGCAGGTGGTCTCTGAGATGATGGAGGTCATCTCTGGGATGCAAGATGGCTTCAGTGAGACCTTGGAGGCAGAAAGAGCTCTAATCGAAGAGAGATACGAAGACAAGATAACCAACTTGcaaaaacatttgaagaaaTTCTACAGCCAGGAGCTGAAGGAGCGTGATCAGGAGATTGAAGCTTTGGCCGCTGCCCTGGAAAAAAACAAGGCAGGTGATTCGGTCCTACATGGAGACTCTGACGGGCCTCGCCGGTCTCAGCGCCTCGCTACTCAGGCAGAATTTGGCAGTCTGCAAGTGGAGCTCAACCAGTGTCGCGCTGAGCTGCTCACCAAGACACAAGAGCTGACAAAGCTGAAGATGCAGCTGGAAGTCCCGGGTCCAACAGGCACCCACACTGGTGCTGTTGACCGCAAGCTGGAGGACGGCCAACGGaACCTGCGCCAGCTGCGCCTGGATTTGCAGAGGCTCGGTGTGGACCTGCAGTCTGGTGAACGAGCCTGCTGTCGCAACACGGGAGGGGAGAGGCTGCGGCAGGCACTAACAGCTGCAGATGAGAAACTAGCCAAACAGGACCAGATCCTATTGGACCTCCAGAATGGCCTGATGCTTGTAAAGGCTGACTTAAGGCGGAAAGCGGAGACCCTGGCCCAGACACAGGCCTTCCAGCCCCAGCTTCCCCCCTCAGGCTCTGTTGCCTCCGGCACACCAGGCTCCTGCAAGAAAAGGGGCTGTGGGGCCGCTGCACCAAGCGACACAGAGAACCGCCCTCCAAATAAACGGCCCTTTTTCCCATCTCTGTTCCCGACGCGTACGCCAACACGTAAAAACATTCGCGAAGAAGCAAATGTTACCCCTTACTCACGGATCTTGCGGTCTCGCCAGCAGTCTCCACCTCCCAGCCCTGTCCCCACCCCACGTAGTCTCAGGGGGAAGTACTGAGCTTTTTGGAGCGTGTCTCCTCTTCAATattatgcacaaaaaaaggttttatttgcCGGTAACTTTATAGTATTTTTATATTGCTTTGTatatattcacttttttttttttgcagtgcaaTTAACTCACTGTTGTCATGCCAAATACATGTATGATGTTCATGCCTGTAAAACTGTTATGCTTTAAAGGGTAGTTGACTACTAAGGGCATTGAGGTGATCTTGAGCAGTAACGTAATCAGTGGCTAATAGCTATGGTCTGTATGGGAAGaatagtgcatgtgtgtgtatacacccTTCTCTTCTGCTGTAAATACTTTTCTACAATAAAATCCATAGAAACATTGGTTTGAGTAGTCTAAGCACTACAGCAAAATTTTCAAGTACTGTACACCATGAAAGTAATTTAACAAGTATGCTTTAAACTATTTAAATTTACAGGCATAACTGCAAGTCAAAACATGTCTGTGTGCTGTCTTTGTTCTACCCTTGTGCAGTTCAAGGTGTACCTTCTTTACTCTGATggagctgtgtgtttttgttccaCTGTTAAACTAGCCTTGAATTATACCAAATCTGCATGTGTATTAAATCTATTTAAAAACCTTA

Function

symbol description
kif20a Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within heart development. Predicted to be located in Golgi apparatus. Predicted to be part of kinesin complex. Predicted to be active in microtubule and nucleus. Orthologous to human KIF20A (kinesin family member 20A).

NR:

description
kinesin-like protein KIF20A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000910 cytokinesis biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10402 KIF20; kinesin family member 20

RNA

RNA id representative length rna type GC content exon number start site end site
TU227214 False 1673 TUCP 0.45 2 22141545 22144199
XM_039778259.1 True 3505 mRNA 0.49 18 22134507 22143641

Neighbor

gene id symbol gene type direction distance location
zgc:175280 slc7a1,LOC102202414 coding upstream 688 22128250 ~ 22133819 (+)
gsx1 gsx1,LOC102779870 coding upstream 49050 22083968 ~ 22085457 (+)
LOC120544110 zfx,LOC101469595,LOC102299651,LOC100691538 coding upstream 118829 22002808 ~ 22015678 (+)
LOC120575707 LOC104965991,LOC104935631,LOC100709878,LOC101470058 coding upstream 132572 22000565 ~ 22001935 (+)
prdx4 prdx4,LOC107386417,LOC102782956,LOC101470355,LOC108237004 coding upstream 135991 21995436 ~ 21998516 (+)
si:dkey-251i10.1 LOC104931197,LOC103353321,LOC101464643,LOC102200398 coding downstream 68658 22212857 ~ 22215288 (+)
LOC120544364 dlg4,LOC102775934,LOC101463677,LOC107386432,LOC107093504 coding downstream 120811 22265010 ~ 22333325 (+)
ephb4a ephb4 coding downstream 196997 22341196 ~ 22381203 (+)
xrra1 NA coding downstream 283140 22427339 ~ 22432587 (+)
LOC120543726 pak3,LOC103353309,LOC103475835,LOC103141826,LOC107093501 coding downstream 337376 22481575 ~ 22512174 (+)
G167569 atp6v1a,LOC106526133,LOC108236878,LOC100710668,LOC101468244 non-coding upstream 102867 22030297 ~ 22031640 (+)
G167564 LOC104935632,LOC104965992,LOC103353333 non-coding upstream 116602 22016075 ~ 22017905 (+)
G167559 map7d2 non-coding upstream 152255 21981342 ~ 21982252 (+)
G167557 NA non-coding upstream 157091 21975882 ~ 21977416 (+)
G167549 NA non-coding upstream 196558 21937689 ~ 21937949 (+)
G167649 NA non-coding downstream 71334 22215533 ~ 22216464 (+)
G167651 NA non-coding downstream 73882 22218081 ~ 22227298 (+)
G167670 spag7 non-coding downstream 305671 22449870 ~ 22452122 (+)
G167711 NA non-coding downstream 310020 22454219 ~ 22455752 (+)
G167717 NA non-coding downstream 316348 22460547 ~ 22463330 (+)
sms sms other upstream 286409 21823653 ~ 21848098 (+)
LOC120544341 LOC108236972,LOC106514048,LOC103368261 other upstream 363753 21764201 ~ 21770754 (+)
dnajc18 dnajc18,LOC101477689,LOC100707186,LOC104924601 other upstream 413642 21713943 ~ 21720865 (+)
LOC120544614 LOC103368254,LOC101478346,LOC103475446,LOC100706924,LOC104924602 other upstream 424130 21680133 ~ 21710377 (+)
LOC120544432 NA other upstream 525659 21599083 ~ 21608848 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other downstream 250317 22394516 ~ 22422054 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other downstream 477194 22621393 ~ 22645826 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other downstream 1697334 23841533 ~ 23918477 (+)
G168226 thoc2 other downstream 1783143 23927342 ~ 23928481 (+)
gab3 NA other downstream 2266106 24410305 ~ 24420345 (+)

Expression


Co-expression Network