dnajc18 (dnajc18,LOC101477689,LOC100707186,LOC104924601)


Basic Information

Item Value
gene id dnajc18
gene name dnajc18,LOC101477689,LOC100707186,LOC104924601
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21713943 ~ 21720865 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU226937
ATGAAGTGCTGCAGCAGCATCATGCTACACCTGCTGATGTTACTCAACCGTCTGTTCTTGTTTTTGTCAGGGGGTCCAGTTTATTAACAGGGTGGCCCGTTAAACACCGCTAAAACAACCAGACAGCAAAAACAGTCTATCTTTAGGCCTTCAGCTTAAAAAAAATGGCCCAGTTGCAGGCCTGTTTGCAGCATGACAACAACCGCCATCGTCTGTTTATCGGATAGTGCGAAGGACTTTGGGTGGCTGCAGGCTTgcacctagctaacgttacgcaGCTGTCTGAAACCAAAGCTAATCGgctatctaacgttagctgcagCGGCTCGCTTTGCCATATGATATTGACGCACATTGCAAAGGCACAGACCTCTACAGAAAGCGATTGGATCAGCAAAACAACATCCGCAACGTTGAAATGGACAAAGAAGAAGCAGACCGGCTGATAGAGAAGGCGAAGCTGTGTTTACGGTCCGGAAGGAAGGATCGGGCGCTGCAGCTGCTATATGAAGCCCAGAATATTTATCCCAGCACCCGGGCCAGAGCGCCTTCCACCAGCAGCATCAAAAGACCAAAAGgtgttcatccatccatctatgtCA
>TU226938
ACGCCAGGGTGTTCTCAGGATAAAGAATTGCAAGGACTTCTATGAAATTCTCGGTGTTTCCAAAGATGCCAGCGATGAAGATTTGAAGAAGGCGTACAGGAAGTTGGCCCTCAAGTTTCATCCTGACAAGAACTTTGCTCCAGGAGCCACGGATGCTTTCAAAGCAATAGGCAATGCATATGCAGTACTGAGCAATCCAGAGAAGAGGCAGCAGTATGATCAATACGGAGATCAATCTGCAGCTTCGAACGCACCCCAAACGTCCAGCCACAGTCGCCATGGATACTACAGAAGCTTTAACAGAGACTTCGAGGCTGACATTTCCCCCGAGGAACTCTTCAACATTTTCTTTGGAGGAAGGTTTCCCACCGGAAATATCCACGTGTACACCAACCAGGGAGCCTCCTACTCTCAGTTCTATCAGCCTCGTCGTCGACGTGCTTATGAGAGGCGCGAGGAGGTGGTGGAGGACAACCAGACTCAGAACACCTTCACAGCGTTCCTGCAGCTTCTCCCCGTGCTGGTGCTAATCCTCATATCAGTGTTTACTCAGATGATGGCTACTAACCCGCCCTACAGTCTCTTCTATAAGCCGGCCATGGGGCTGGTGGTCTCCAGGGAAACGCAGCACATGGGTGTACCATACTATGTGGATAAAAGTTTTGAGAAGGAATACCGTGGAGGTGCGCTGGATGAAATAGAGAAAACAATTGAGAGCGACTATATCGAACACCTGCAGGGAAGCTGCTGGAAAGAGAAACAGCAAAAATCTGACTTGGCAAACCTTGGACAGCTGTACCGAGATGAACGGTTAAAGCAGAAGGCCGAGTCAATGAGGCTGGACAACTGTGAGAAACTGCATCGATTGGTTGGGCGTCAGAGAGGCAAATGAGGACTGTTTGAGAGGAGAACACGTTTCTTTACAGACTTTacaataatgcattttattggATTGTCTAATTTATCCAATCTGGCCACTTTGTaaagaaatctttttttaagGTACAGCGCAGTCAGTGGGAGATTATGCCACTGGAAACAATGTGccttctctcctctttgatgGTAGAAAATAGAGTTGCATGTTAGCTGCCAACCCTGGCTGTGGTGGTAGCAGCATCAAGTGCAAACTCACTGTGGCAGTGTGTTCGATGTCTCAGAGCCTTTAAACTTTCTTATAGAAATGGCATGACATAAGGGGTCTCCCTTTGGGGTTATGAAGGCAGTAGTATGTTCACACATACAATTTTGTTTGTTCAGGTTTTGTAGTTTAcctgtgtatttatttttgaatgtttttgtgtcCTCACTGAAATTTTAGGTGTATTTATTCAATATTTAATAGAGTGAATGTTACTTGAGATTCCTGGctcattattgtttttttttctgtaggaAGTAATAAAACACAGTGACTTAAATCATACTGTAGTCTTTGGACAAATCTGAGAACTTCTGTACTGAAATGACAGAGggccttttatttattattaaaacaaagacaaatcaggcgcctggttagctcacctggtagagcgggcgcccatatatagaggtttactcctcaacgcagcagctgccggttcgactccgacctgcggccctttgctgcagttCATTCCCCTtcactctcccctttcatgtctaaactgtcttatacaaataaaggcctgaaaaaaaaaagattgttataaaagtagaaaaaaaagagctcCAGTAGAGCTTTCCTCCATAATTTTGATTTGTCAACAGCAGTGAGTCCAGTTCAATCAAAAAGCCCATTCACAGTCCTGCACTGTGTTCTGCTGTACCTGGTAGATGTGGGAAGCTCGATCGGGCGCAATATCGGTAAGGTTGCAAAGGCTTAAATGGCATGCAATagcttcttttcctaaaccgtGCACAAGCATTTTGTTCtcagaaaaacgttttttttggcCCATGGTTTATAACCGTTTTATAAATTCTGCACCTttttaatttatactgttttataaagaagacacattttgttttgaaaatctCCATCTTAAAGAGAATTAACAATTAAAATTGTGTTCAGAAATTCTATTAAATATCCGTGGAACTGAACATCTTTCTCCCACAGCTAGGAACCAGAATTTGACTTTTGTCTTGTCAGTTCTAGTCATGAGTAGGATGCTAACTTTGTGGAGTGAACTTTGTTTATACCAACCACAGATGATTCAATCTCTACAGACATCAACAGTTGTTTCTGTGCACTAAGACTGCCAAACTGCCTTAGCTGTTCTCATACTTCTGAAATATTCAGGTTCATCTCAAGCACTTTTAAGTTAATATTTAATCCTGTGTTCCCTGTTACTGTTGCATGCACCCTAGTGAGAGAGTGTTATCAGttgcatatttatttttcagaggACACATCTTAATGACTACTGACCCACTAACAATGTTAACTGATTAGAATATTGAAGTCCACACTGTAACTCACCAACATGTAAAACCTTTACTGTGACACGCAAAAATCAGGTTTGGGTATCATTTGGTGTGGTAGTACACTTGAGCAACACTGCAGAATTCAGTTTTCAGCCAAATATACCTGG
>XM_039777988.1
ATGGACAAAGAAGAAGCAGACCGGCTGATAGAGAAGGCGAAGCTGTGTTTACGGTCCGGAAGGAAGGATCGGGCGCTGCAGCTGCTATATGAAGCCCAGAATATTTATCCCAGCACCCGGGCCAGAGaaaaggggccCCGCGGGGGACCACGCCAGGGTGTTCTCAGGATAAAGAATTGCAAGGACTTCTATGAAATTCTCGGTGTTTCCAAAGATGCCAGCGATGAAGATTTGAAGAAGGCGTACAGGAAGTTGGCCCTCAAGTTTCATCCTGACAAGAACTTTGCTCCAGGAGCCACGGATGCTTTCAAAGCAATAGGCAATGCATATGCAGTACTGAGCAATCCAGAGAAGAGGCAGCAGTATGATCAATACGGAGATCAATCTGCAGCTTCGAACGCACCCCAAACGTCCAGCCACAGTCGCCATGGATACTACAGAAGCTTTAACAGAGACTTCGAGGCTGACATTTCCCCCGAGGAACTCTTCAACATTTTCTTTGGAGGAAGGTTTCCCACCGGAAATATCCACGTGTACACCAACCAGGGAGCCTCCTACTCTCAGTTCTATCAGCCTCGTCGTCGACGTGCTTATGAGAGGCGCGAGGAGGTGGTGGAGGACAACCAGACTCAGAACACCTTCACAGCGTTCCTGCAGCTTCTCCCCGTGCTGGTGCTAATCCTCATATCAGTGTTTACTCAGATGATGGCTACTAACCCGCCCTACAGTCTCTTCTATAAGCCGGCCATGGGGCTGGTGGTCTCCAGGGAAACGCAGCACATGGGTGTACCATACTATGTGGATAAAAGTTTTGAGAAGGAATACCGTGGAGGTGCGCTGGATGAAATAGAGAAAACAATTGAGAGCGACTATATCGAACACCTGCAGGGAAGCTGCTGGAAAGAGAAACAGCAAAAATCTGACTTGGCAAACCTTGGACAGCTGTACCGAGATGAACGGTTAAAGCAGAAGGCCGAGTCAATGAGGCTGGACAACTGTGAGAAACTGCATCGATTGGTTGGGCGTCAGAGAGGCAAATGAGGACTGTTTGAGAGGAGAACACGTTTCTTTACAGACTTTacaataatgcattttattggATTGTCTAATTTATCCAATCTGGCCACTTTGTaaagaaatctttttttaagGTACAGCGCAGTCAGTGGGAGATTATGCCACTGGAAACAATGTGccttctctcctctttgatgGTAGAAAATAGAGTTGCATGTTAGCTGCCAACCCTGGCTGTGGTGGTAGCAGCATCAAGTGCAAACTCACTGTGGCAGTGTGTTCGATGTCTCAGAGCCTTTAAACTTTCTTATAGAAATGGCATGACATAAGGGGTCTCCCTTTGGGGTTATGAAGGCAGTAGTATGTTCACACATACAATTTTGTTTGTTCAGGTTTTGTAGTTTAcctgtgtatttatttttgaatgtttttgtgtcCTCACTGAAATTTTAGGTGTATTTATTCAATATTTAATAGAGTGAATGTTACTTGAGATTCCTGGctcattattgtttttttttctgtaggaAGTAATAAAACACAGTGACTTAAATCATA

Function

symbol description
dnajc18 Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJC18 (DnaJ heat shock protein family (Hsp40) member C18).

NR:

description
PREDICTED: dnaJ homolog subfamily C member 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226937 False 602 lncRNA 0.49 3 21713943 21715393
TU226938 True 2582 TUCP 0.42 7 21715699 21720865
XM_039777988.1 False 1575 mRNA 0.46 8 21714543 21719709

Neighbor

gene id symbol gene type direction distance location
LOC120544431 NA coding upstream 124833 21565175 ~ 21589110 (+)
puraa pura,LOC103395727,LOC107557059,LOC103356786,LOC107386391 coding upstream 142473 21562231 ~ 21571470 (+)
slc22a6l LOC104936497,LOC103356784,LOC104961719 coding upstream 243915 21465243 ~ 21470028 (+)
pygma LOC104936496,LOC103356782,LOC102785324,LOC102293037,LOC102211029,LOC101481199 coding upstream 266951 21435673 ~ 21446992 (+)
zgc:165604 LOC103375428,LOC101483234,LOC100710403 coding upstream 447413 21260820 ~ 21266530 (+)
gng8 LOC107669366,LOC107567170,LOC107715333 coding downstream 22332 21743197 ~ 21745734 (+)
tmem45b tmem45b coding downstream 25265 21746130 ~ 21751622 (+)
LOC120543655 ryr1,LOC103368261 coding downstream 49798 21770663 ~ 21821936 (+)
phldb2a LOC103368264 coding downstream 166906 21887771 ~ 21904548 (+)
lipia NA coding downstream 224530 21945395 ~ 21952073 (+)
G167384 LOC103356783 non-coding upstream 220674 21476203 ~ 21493269 (+)
G167376 NA non-coding upstream 255079 21458121 ~ 21458864 (+)
G167375 NA non-coding upstream 257502 21455487 ~ 21456441 (+)
G167374 NA non-coding upstream 263594 21450087 ~ 21450349 (+)
G167269 NA non-coding upstream 507076 21204762 ~ 21206867 (+)
G167444 NA non-coding downstream 1466 21722331 ~ 21724923 (+)
G167544 LOC103353342 non-coding downstream 200417 21921282 ~ 21923414 (+)
LOC120543580 NA non-coding downstream 210378 21931243 ~ 21933808 (+)
G167549 NA non-coding downstream 216824 21937689 ~ 21937949 (+)
G167557 NA non-coding downstream 255017 21975882 ~ 21977416 (+)
LOC120544614 LOC103368254,LOC101478346,LOC103475446,LOC100706924,LOC104924602 other upstream 3566 21680133 ~ 21710377 (+)
LOC120544432 NA other upstream 105095 21599083 ~ 21608848 (+)
mia mia other upstream 509781 21202550 ~ 21204162 (+)
si:dkey-71l1.1 LOC101485670,LOC102299221,LOC103355094,LOC102789525,LOC104929928 other upstream 516906 21192051 ~ 21197037 (+)
layna layn,LOC100708261,LOC101467228,LOC104929931 other upstream 533191 21173994 ~ 21180752 (+)
LOC120544341 LOC108236972,LOC106514048,LOC103368261 other downstream 43336 21764201 ~ 21770754 (+)
sms sms other downstream 102788 21823653 ~ 21848098 (+)
kif20a kif20a,LOC102778170 other downstream 413642 22134507 ~ 22144199 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other downstream 673651 22394516 ~ 22422054 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other downstream 900528 22621393 ~ 22645826 (+)

Expression


Co-expression Network