LOC120544614 (LOC103368254,LOC101478346,LOC103475446,LOC100706924,LOC104924602)


Basic Information

Item Value
gene id LOC120544614
gene name LOC103368254,LOC101478346,LOC103475446,LOC100706924,LOC104924602
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21680133 ~ 21710377 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU226936
tcgctctctctctctctctctctctctctctctctctctctctctctctctctctctctccgttcaTCCTCCCCCACATTAACAGCTTAGCACAGCAGCAGCTCCTACTGTACAGCATCCAGCATCCAGCATCCATCCCTGCCTGGGGAGCAGCAGTCCTACCCGGCGCAGCACCGACGCACGGAGGGGGCGCATCATCTAAGTGATGCCACAGCATCAGTCGCATTTCGACAACAAATACTGAGAGTAGACTctaaaaggagggagagaaaacagCTTCAGCCTCGAAGACAGCAACTGCCCATGAAGATGTCTAACGCTGACATCGTCTTAAACGCCACCGATCGGATGGTGAAATCTGTCCCCTTCCCCCTGAGCCACCGCCTTACAATTAAGGAAGTGTTTGACTGCGAAGGGAAACCTCGTGTGGATCTCCTGAAGGCCCACCTCACCAAGGAGGGCCGTGTAGAAGAAGCTGTGGCACTTCGAATCGTCAGTGAGGGAGCAGCTATCCTGCGTCAGGAGAAAACTATACTGGACATTGAGGCACCAGTCACAGTCTGTGGTGACATCCATGGGCAATTCTTTGATCTGATGAAGCTGTTTGAAGTGGGAGGATCACCAGCCACAACACGGTACCTGTTCCTTGGGGACTACGTGGACCGTGGCTACTTCAGTATTGAGtgtGTTTTATACCTCTGGTCGCTGAAAATCCTCTATCCAAAGACACTATTTTTACTTCGTGGAAATCATGAATGTAGACATTTGACAGAGTATTTCACCTTCAAACAAGAATGTAAAATCAAGTACTCAGAGCAGGTGTACGACTCATGTATGGATGCATTTGACTGCCTTCCCCTGGCTGCACTCATGAACCAACAGTTTCTGTGTGTCCATGGTGGGCTCTCACCTGAAATACACACCTTAGATGACATTAAAAAG
>XM_039778503.1
CAGGCAGTCCCGTGAAACATTTGCGTGGGAGTTCCCTCCACCGCCATGTCGGGGGTgcatcgctctctctctctctctctctctctctctctctctctctctctctctctctctctctccgttcaTCCTCCCCCACATTAACAGCTTAGCACAGCAGCAGCTCCTACTGTACAGCATCCAGCATCCAGCATCCATCCCTGCCTGGGGAGCAGCAGTCCTACCCGGCGCAGCACCGACGCACGGAGGGGGCGCATCATCTAAGTGATGCCACAGCATCAGTCGCATTTCGACAACAAATACTGAGAGTAGACTctaaaaggagggagagaaaacagCTTCAGCCTCGAAGACAGCAACTGCCCATGAAGATGTCTAACGCTGACATCGTCTTAAACGCCACCGATCGGATGGTGAAATCTGTCCCCTTCCCCCTGAGCCACCGCCTTACAATTAAGGAAGTGTTTGACTGCGAAGGGAAACCTCGTGTGGATCTCCTGAAGGCCCACCTCACCAAGGAGGGCCGTGTAGAAGAAGCTGTGGCACTTCGAATCGTCAGTGAGGGAGCAGCTATCCTGCGTCAGGAGAAAACTATACTGGACATTGAGGCACCAGTCACAGTCTGTGGTGACATCCATGGGCAATTCTTTGATCTGATGAAGCTGTTTGAAGTGGGAGGATCACCAGCCACAACACGGTACCTGTTCCTTGGGGACTACGTGGACCGTGGCTACTTCAGTATTGAGtgtGTTTTATACCTCTGGTCGCTGAAAATCCTCTATCCAAAGACACTATTTTTACTTCGTGGAAATCATGAATGTAGACATTTGACAGAGTATTTCACCTTCAAACAAGAATGTAAAATCAAGTACTCAGAGCAGGTGTACGACTCATGTATGGATGCATTTGACTGCCTTCCCCTGGCTGCACTCATGAACCAACAGTTTCTGTGTGTCCATGGTGGGCTCTCACCTGAAATACACACCTTAGATGACATTAAAAAGGTAATAACATACTGCCTCAGCACCACCAAggggcTGGGCGCTGTGTTGCTGTGGTCTGATCCTCTGGAGGATTTTGGCAATGAGAAAACCCAGGAATATTTCAGCCACAACACAGTGCGAGGCTGCTCCTACTTCTACAGTTATCCAGCTGTATGCGAGTTCCTACAGAGCAATAACCTATTATCAATTATCCGAGCGCATGAAGCACAAGATGCAGGCTACCGGATGTATCGTAAAAGTCAGACCACTGGATTCCCATCCCTCATTACCATCTTCTCAGCACCAAACTACCTGGATGTTTACAACAACAAAGCTGCTGTActgaaatatgaaaataatgTCATGAACATCCGACAGTTCAACTGTTCACCCCATCCCTACTGGCTGCCCAACTTCATGGATGTCTTCACCTGGTCTCTGCCATTTGTTGGCGAGAAAGTCACAGAAATGCTGGTGAATGTGCTGAGCATCTGCTCTGATGATGAACTCATGATGAATGATGAAGATGAGATATTTGATGCCAATGCAGCTGCAGCACGCAAGGAGGTGATCAGAAACAAGATCCGTGCTATTGGGAAAATGGCCAAAATGTTCTCAGTTCTCAGAGAGGAGAGTGAAAATGTGTTGACGCTTAAAGGCCTGACGCCCACTGGCATGCTGCCGAGCGGGGTTCTCTCTGGAGGCAAACAGACACTGCAGAGTGCCACCATTGAAGCCATCGAAGCCATCGAGACGACTGATGAGGACGGAGAAGcTATCCGTGGGTTCTCCCCCCAGCACAAGATTGCCAGCTTTGAGGAGGCCAAGGGCCTCGACCGCATCAACGAGCGCATGCCACCTCGCAAGGACGGGGTGAACCATGTGGGTCACTCCATGGGAAAGATGAATATGTCAGAGGCAAACGGCACGGATGACAACAGCAACATTTAGTGATTTGCTGTCGGAGCCTCAGAACCATTCTGCTGTTGCTCTGTGCAGCAAGACATTGCCAAATTGGGAATTCAGGCCTCAGAACAGAGAAATAAACCAGGCCCACTGACAGAACATGAAAATCTGCAGCAAAACTAAAACGGGCGAAAAAGGTCATTTTTTTCATGACAGTATGTCATCGCAcagttggggg
>XM_039778504.1
TCAGGCAGTCCCGTGAAACATTTGCGTGGGAGTTCCCTCCACCGCCATGTCGGGGGTgcatcgctctctctctctctctctctctctctctctctctctctctctctctctctctctctccgttcaTCCTCCCCCACATTAACAGCTTAGCACAGCAGCAGCTCCTACTGTACAGCATCCAGCATCCAGCATCCATCCCTGCCTGGGGAGCAGCAGTCCTACCCGGCGCAGCACCGACGCACGGAGGGGGCGCATCATCTAAGTGATGCCACAGCATCAGTCGCATTTCGACAACAAATACTGAGAGTAGACTctaaaaggagggagagaaaacagCTTCAGCCTCGAAGACAGCAACTGCCCATGAAGATGTCTAACGCTGACATCGTCTTAAACGCCACCGATCGGATGGTGAAATCTGTCCCCTTCCCCCTGAGCCACCGCCTTACAATTAAGGAAGTGTTTGACTGCGAAGGGAAACCTCGTGTGGATCTCCTGAAGGCCCACCTCACCAAGGAGGGCCGTGTAGAAGAAGCTGTGGCACTTCGAATCGTCAGTGAGGGAGCAGCTATCCTGCGTCAGGAGAAAACTATACTGGACATTGAGGCACCAGTCACAGTCTGTGGTGACATCCATGGGCAATTCTTTGATCTGATGAAGCTGTTTGAAGTGGGAGGATCACCAGCCACAACACGGTACCTGTTCCTTGGGGACTACGTGGACCGTGGCTACTTCAGTATTGAGtgtGTTTTATACCTCTGGTCGCTGAAAATCCTCTATCCAAAGACACTATTTTTACTTCGTGGAAATCATGAATGTAGACATTTGACAGAGTATTTCACCTTCAAACAAGAATGTAAAATCAAGTACTCAGAGCAGGTGTACGACTCATGTATGGATGCATTTGACTGCCTTCCCCTGGCTGCACTCATGAACCAACAGTTTCTGTGTGTCCATGGTGGGCTCTCACCTGAAATACACACCTTAGATGACATTAAAAAGGTAATAACATACTGCCTCAGCACCACCAAggggcTGGGCGCTGTGTTGCTGTGGTCTGATCCTCTGGAGGATTTTGGCAATGAGAAAACCCAGGAATATTTCAGCCACAACACAGTGCGAGGCTGCTCCTACTTCTACAGTTATCCAGCTGTATGCGAGTTCCTACAGAGCAATAACCTATTATCAATTATCCGAGCGCATGAAGCACAAGATGCAGGCTACCGGATGTATCGTAAAAGTCAGACCACTGGATTCCCATCCCTCATTACCATCTTCTCAGCACCAAACTACCTGGATGTTTACAACAACAAAGCTGCTGTActgaaatatgaaaataatgTCATGAACATCCGACAGTTCAACTGTTCACCCCATCCCTACTGGCTGCCCAACTTCATGGATGTCTTCACCTGGTCTCTGCCATTTGTTGGCGAGAAAGTCACAGAAATGCTGGTGAATGTGCTGAGCATCTGCTCTGATGATGAACTCATGATGAATGATGAAGATGAGATATTTGATGCCAATGCAGCTGCAGCACGCAAGGAGGTGATCAGAAACAAGATCCGTGCTATTGGGAAAATGGCCAAAATGTTCTCAGTTCTCAGAGAGGAGAGTGAAAATGTGTTGACGCTTAAAGGCCTGACGCCCACTGGCATGCTGCCGAGCGGGGTTCTCTCTGGAGGCAAACAGACACTGCAGAGTGcTATCCGTGGGTTCTCCCCCCAGCACAAGATTGCCAGCTTTGAGGAGGCCAAGGGCCTCGACCGCATCAACGAGCGCATGCCACCTCGCAAGGACGGGGTGAACCATGTGGGTCACTCCATGGGAAAGATGAATATGTCAGAGGCAAACGGCACGGATGACAACAGCAACATTTAGTGATTTGCTGTCGGAGCCTCAGAACCATTCTGCTGTTGCTCTGTGCAGCAAGACATTGCCAAATTGGGAATTCAGGCCTCAGAACAGAGAAATAAACCAGGCCCACTGACAGAACATGAAAATCTGCAGCAAAACTAAAACGGGCGAAAAAGGTCATTTTTTTCATGACAGTATGTCATCGCAcagttggggg

Function

NR:

description
serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04348 PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
TU226936 False 942 TUCP 0.50 5 21680193 21698381
XM_039778503.1 True 2124 mRNA 0.50 14 21680134 21710377
XM_039778504.1 False 2074 mRNA 0.50 13 21680133 21710377

Neighbor

gene id symbol gene type direction distance location
LOC120544431 NA coding upstream 91023 21565175 ~ 21589110 (+)
puraa pura,LOC103395727,LOC107557059,LOC103356786,LOC107386391 coding upstream 108663 21562231 ~ 21571470 (+)
slc22a6l LOC104936497,LOC103356784,LOC104961719 coding upstream 210105 21465243 ~ 21470028 (+)
pygma LOC104936496,LOC103356782,LOC102785324,LOC102293037,LOC102211029,LOC101481199 coding upstream 233141 21435673 ~ 21446992 (+)
zgc:165604 LOC103375428,LOC101483234,LOC100710403 coding upstream 413603 21260820 ~ 21266530 (+)
gng8 LOC107669366,LOC107567170,LOC107715333 coding downstream 32820 21743197 ~ 21745734 (+)
tmem45b tmem45b coding downstream 35753 21746130 ~ 21751622 (+)
LOC120543655 ryr1,LOC103368261 coding downstream 60286 21770663 ~ 21821936 (+)
phldb2a LOC103368264 coding downstream 177394 21887771 ~ 21904548 (+)
lipia NA coding downstream 235018 21945395 ~ 21952073 (+)
G167384 LOC103356783 non-coding upstream 186864 21476203 ~ 21493269 (+)
G167376 NA non-coding upstream 221269 21458121 ~ 21458864 (+)
G167375 NA non-coding upstream 223692 21455487 ~ 21456441 (+)
G167374 NA non-coding upstream 229784 21450087 ~ 21450349 (+)
G167269 NA non-coding upstream 473266 21204762 ~ 21206867 (+)
G167444 NA non-coding downstream 11954 21722331 ~ 21724923 (+)
G167544 LOC103353342 non-coding downstream 210905 21921282 ~ 21923414 (+)
LOC120543580 NA non-coding downstream 220866 21931243 ~ 21933808 (+)
G167549 NA non-coding downstream 227312 21937689 ~ 21937949 (+)
G167557 NA non-coding downstream 265505 21975882 ~ 21977416 (+)
LOC120544432 NA other upstream 71285 21599083 ~ 21608848 (+)
mia mia other upstream 475971 21202550 ~ 21204162 (+)
si:dkey-71l1.1 LOC101485670,LOC102299221,LOC103355094,LOC102789525,LOC104929928 other upstream 483096 21192051 ~ 21197037 (+)
layna layn,LOC100708261,LOC101467228,LOC104929931 other upstream 499381 21173994 ~ 21180752 (+)
dynll2b LOC107089378,LOC101174042,LOC103395122,LOC106514090,LOC107387006,LOC103140945 other upstream 711318 20966862 ~ 20968815 (+)
dnajc18 dnajc18,LOC101477689,LOC100707186,LOC104924601 other downstream 3566 21713943 ~ 21720865 (+)
LOC120544341 LOC108236972,LOC106514048,LOC103368261 other downstream 53824 21764201 ~ 21770754 (+)
sms sms other downstream 113276 21823653 ~ 21848098 (+)
kif20a kif20a,LOC102778170 other downstream 424130 22134507 ~ 22144199 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other downstream 684139 22394516 ~ 22422054 (+)

Expression


Co-expression Network