LOC120543877


Basic Information

Item Value
gene id LOC120543877
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23945418 ~ 23949105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228081
atgatcttttttttctgtaagtTCTTTGCAGAGTTGTACAAACTCGTGTTTTCCTGATTTTTCCCAGTTTTTGATCCATTCACCAGGGAGGATAAGTGTCGCCATCTTCCATACGCACAGCCCGGATGTCTAATTCATCATGGCACACGCAGGGTCAAATGTGGTggttagctgctgctgctagctcaCTGTTGCATGGTGGGACACTGAGGCTGTCTCTGAATGCTTTGTTATTACGGAACTTAGCTAGTGTTCCATGAGTGGAAATGGTACCATTTAAGTGCACATTAGGGCTCAGTTCAGTCAAAGTCCTTTTAAATATCATCAAACTACGTTAAAATGATAATTAGAACAAGTAACACTACATTTGACTTAAATAAAAGAATTGCA
>XR_005636407.1
TTTGACAACCCTTTATCTACTCGATCTTACTGTAGTCTCCTCACCCAATTTTTTGTATGTATCAGAAGATaacttttattgaacaacatcATGAAATATCAGTTTATTTTTCATGCTGCCATGCCTAGGTAATTAAAAGCCTAACAAGGCAGTCAACGTCACAgacatagctagctagatatAGAACAATTGATGTCGTAGCTAACTTGCTATGACGTTATGTCATGAGCAGTCGTTTCCCTCCGTTTGATTAGCTACAATTAACGTTACTATTTGTTAACGTTACTGTTAAcgttactgctaacgttactaggTTCTACCGTTGGCAAACTAACGTTAACTAACTAACTGCATTTTAACATCAAATGTAGCTACTGCAATTAAGAAGCTGAAGTATATCCATGCAACCGGAGGGGAAagccgttctcttaatacatccatgggTTTTTGATCCATTCACCAGGGAGGATAAGTGTCGCCATCTTCCATACGCACAGCCCGGATGTCTAATTCATCATGGCACACGCAGGGTCAAATGTGGTggttagctgctgctgctagctcaCTGTTGCATGGTGGGACACTGAGGCTGTCTCTGAATGCTTTGTTATTACGGAACTTAGCTAGTGTTCCATGAGTGGAAATGGTACCATTTAAGTGCACATTAGGGCTCAGTTCAGTCAAAGTCCTTTTAAATATCATCAAACTACGTTAAAATGATAATTAGAACAAGTAACACTACATTTGACTTAAATAAAAGAATTGCAAACCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228081 False 390 lncRNA 0.40 2 23945418 23949097
XR_005636407.1 True 775 lncRNA 0.39 2 23947855 23949105

Neighbor

gene id symbol gene type direction distance location
cchcr1 NA coding upstream 118704 23816480 ~ 23826714 (+)
si:dkey-125i10.3 NA coding upstream 157795 23776894 ~ 23787623 (+)
LOC120544379 NA coding upstream 211010 23731626 ~ 23734408 (+)
LOC120544661 LOC103367246,LOC104954666 coding upstream 234983 23707871 ~ 23710435 (+)
LOC120544660 lpar6,LOC104954664,LOC103367244 coding upstream 239458 23703829 ~ 23705960 (+)
LOC120543788 NA coding downstream 33645 23982750 ~ 23985605 (+)
arhgap35b LOC103363264,LOC103395548 coding downstream 52882 24001987 ~ 24013170 (+)
pafah1b2 pafah1b2 coding downstream 152059 24101164 ~ 24106620 (+)
LOC120575597 rab6a coding downstream 207345 24156450 ~ 24165927 (+)
dnajb13 dnajb13 coding downstream 217924 24167029 ~ 24171242 (+)
G168218 nlgn3b,LOC104954573,LOC103367236 non-coding upstream 142609 23800822 ~ 23802809 (+)
G168217 NA non-coding upstream 147111 23790798 ~ 23798307 (+)
G168207 NA non-coding upstream 181286 23763501 ~ 23764132 (+)
G168205 fam76b non-coding upstream 185179 23756043 ~ 23760239 (+)
G168195 NA non-coding upstream 202055 23742131 ~ 23743363 (+)
G168291 LOC104954468,LOC103363262 non-coding downstream 36577 23985682 ~ 23986537 (+)
G168301 NA non-coding downstream 64629 24013734 ~ 24013946 (+)
G168311 dscaml1,LOC107087877,LOC103395551,LOC106534979,LOC108247600,LOC105929366 non-coding downstream 83656 24032761 ~ 24033218 (+)
G168318 NA non-coding downstream 141170 24090275 ~ 24093799 (+)
G168360 NA non-coding downstream 226072 24175177 ~ 24178539 (+)
G168226 thoc2 other upstream 16937 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 26941 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1299592 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 1523364 22394516 ~ 22422054 (+)
kif20a kif20a,LOC102778170 other upstream 1801219 22134507 ~ 22144199 (+)
gab3 NA other downstream 461200 24410305 ~ 24420345 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 1037360 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 1890299 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 1919049 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 2050958 26000063 ~ 26223445 (+)

Expression


Co-expression Network