RNA id: XM_039778666.1


Basic Information

Item Value
RNA id XM_039778666.1
length 1405
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC120544714
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23969493 ~ 23971472 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGTTGTTTTTGCCATCTCGAACTGTATTTTGAGACTCCCTTTGGACCAGGAAAATGTATGCAGCTTTAACGCTCTTCGTCTTCATCTGCTTGACTGCCACCACCCATGCAGATCACCATCAGCCTTGTCATGCACCCAATATGACAGGATTCATGAATGTGTTAAGCCTTAAGGGTGAATTGAAAGCATTTGGTGCATTCACTTATGACTCAATGGGCAAGAAACTACGGTTCAGATCAAACGAGAGCCACCCCGACAACACATCCGTAGGTTTGGATGTGCTGATGTTTTTCGATGAGGGAATATTCTATGAGATTGACAGCAAAAACCAGAGctgtgagaaaaaaacattgcaaTGCACCCAGCACCCTCTAGATATCCCCGATGATGCAACATTCATGACTACAGTAAACACTGGGAATCCATCCATTGAAGGGGAGGGATTAAAAATCAATTCATGGACAGGATCAATGCCAGACAAGAAAGGCTGGTACTACATGGCTGTAACCATGGGATGTTTGCCTGTGAGCACATTCTACTTCTATGAGTCCTCATCATTCCTTTTCAGCCTCATGGATATTGACAATGAGATCAAGGATCCTGATCTCCTCATGGTGCCCTCCATTTGTCTGGGACAGCCTTTGGAGGAGACACCTGAAGGGACCGTCCATAGCTTCCTCAACGAGTTCATGTAGATGACACCTTGGCAGCAGAAAATCCAACCCCCTATCCAAGTGTAGCCTGCCAGAACCTTAGACTTTTCACATGCATGTTACAGGAcagtttaacaaatattgctaTGGGCAACTCCTTGcagctttttatatatatatctttgaGTAGACAATTGATAAGTCAGACTTTTAGCTTCTTATGAGTCATTTGTGCTGAAACAGGAAACCATGCATTTGGGGTAAAGACCATTCATTAGGGGCTTAACAAAACAAACGATATGGGAGCTTTTGTTGATTTGTTTGCATCAGATGATTTACTAATATAATTGGATGGTAATAATTTACTTATATTATAAGTTCGAGAAATGTGGTCAAATATATTAGAGTTATTATATTATGTGTGAGTGTacgtaaatatatttttgtgaagattatgtatgtgtatgtgtatatacatgtatgtttgaATGTCGATATATATCTGCATGGATTGTACATTAAAAAACACCAAATGGCATATAGTTACATGGGAGTGTTCCACAGTACTAAGGGTCAGGAAGggaagttaaaaaaattaaaaaattaaaataataatgacaatgacaataatTAATTACTGAGCTACGGAAAAGggattaaataaatgtatatgcctacttcttcctactccttttcagACATGTCTTGGTTGATGTTTCTTattgtttattaaatgttttgcttatttaa

Function

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228084 lncRNA downstream 205354 23763547 ~ 23764139 (-) True G168238
TU227962 lncRNA downstream 363188 23605559 ~ 23606305 (-) True G168161
TU227913 lncRNA downstream 514427 23450693 ~ 23455066 (-) False mink1
TU228248 lncRNA upstream 134110 24105582 ~ 24108489 (-) True G168351
TU228274 lncRNA upstream 202354 24173826 ~ 24174101 (-) True G168365
TU228357 lncRNA upstream 354959 24326431 ~ 24327158 (-) True G168431
TU228390 lncRNA upstream 358037 24329509 ~ 24330155 (-) True G168452
TU228443 lncRNA upstream 424304 24395776 ~ 24398400 (-) False radx
XM_039778133.1 mRNA downstream 502 23949416 ~ 23968991 (-) False stag2a
XM_039778132.1 mRNA downstream 502 23949416 ~ 23968991 (-) True stag2a
XM_039777236.1 mRNA downstream 20633 23920564 ~ 23948860 (-) False thoc2
XM_039777234.1 mRNA downstream 20633 23920564 ~ 23948860 (-) True thoc2
XM_039778004.1 mRNA downstream 157545 23796218 ~ 23811948 (-) True nlgn3b
XM_039778665.1 mRNA upstream 3375 23974847 ~ 23976295 (-) False LOC120544713
XM_039778006.1 mRNA upstream 14180 23985652 ~ 23996858 (-) True LOC120544352
XM_039777359.1 mRNA upstream 43822 24015294 ~ 24071090 (-) True LOC120543934
XM_039777360.1 mRNA upstream 43822 24015294 ~ 24071007 (-) False LOC120543934
XM_039777361.1 mRNA upstream 64963 24036435 ~ 24071007 (-) False LOC120543934
XR_005636406.1 other downstream 20633 23922633 ~ 23948860 (-) False thoc2
TU228135 other downstream 43678 23921260 ~ 23925815 (-) False thoc2
TU228137 other downstream 43678 23921260 ~ 23925815 (-) False thoc2
TU228118 other downstream 157730 23803551 ~ 23811763 (-) False nlgn3b
TU227963 other downstream 351372 23617275 ~ 23618121 (-) True G168162
TU228215 other upstream 3082 23974554 ~ 23976321 (-) True LOC120544713
TU228489 other upstream 521114 24492586 ~ 24496582 (-) False LOC120543987
XR_005636486.1 other upstream 684331 24655803 ~ 24904851 (-) True LOC120544362
XR_005636485.1 other upstream 684331 24655803 ~ 24904850 (-) False LOC120544362
TU228619 other upstream 793527 24764999 ~ 24904807 (-) False LOC120544362

Expression Profile