RNA id: XM_039778004.1


Basic Information

Item Value
RNA id XM_039778004.1
length 4347
RNA type mRNA
GC content 0.47
exon number 7
gene id nlgn3b
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23796218 ~ 23811948 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGGTAGGCTAGATGGGTTTCGCCCGAGAACAAAGCGTGTGAGTACGTGAGTGCTGTCCGAGGTTACGGTGGTTACTTAATGGTTTCTAAATTGGGATTTTGTCGGTTGTTGGAGGGTGAATTTAATGCACTGGCGTATCCCGGTGGTTGCCTAGTAACGCGCTGGCAGTGGGCGCCGTAGAGAGATCTCTATGGTGGGCGCTCCATTAAAACCGTTGGCGCTCCTGACCTTGGCGTCGTATATGCGCAAAGCACACAGACTGTGCAAAGCAGGAGATAAGAGTAAAGATCCGCGTGTTTGATACTGAAACCCGGGGAATATTTCACGCAGCCCCGTTGTCTTATAAGCGAAACGGACGGGCATGGTATGGAGAGATGGAGCGCGTATCAGCTTCTGTAAAAGCAGATTTGTGTGCACTGCAATGAAAAGCGGAAGTGGGGGTGGTCCATACCTGGCTGAGGGGATTTTGGATTTGATAACCATTGCAGTCAAAGGCACAGTGAGTGATGTCTGTTTGACAGAGTCAGTGCAAAGGGACTGAGCGGACACTACAGTGTGCATTTGTGCTATACAAGGGCACTGTCCAGCCCAGACCATGTGGCTGGCTACATTTAGAGACCATCTGTTGCCTGCACACCTGCTACATCATCAAGGGACTGTTACCATCACCCACTGTGCTCTTCTTTGGTGGATATTATGTTCCTGCTGGTCATTCACCAAGGCAACAAGCCAGAAATTCTACCCAACAGTGACCACTCAGTTTGGGAAACTGCGAGGCCTCAGGGTTCCTGTGCCCAGCGAGGTGCTCAGGCCTGTTGATCAGTATCTGGGGGTCCCCTATGCTGCTCCACCCGTGGGTGAGAAGCGCTTCATGCCCCCCGACCAGCCAGCCTCTTGGTCAGGTGTCAAGAATGCTACCCACTTCATGCCTGTGTGCCCTCAGAACATCCACAACACCGTGCCAGAGATCATGATGCCCATATGGTTCACCTATAACCTGGACACAGTAGCCACATACATTCAGGATCAGAGCGAGGACTGTTTATATCTAAACATCTACACTCCGACAGAGGAGGGGAGCCAACACAAGAAAAAGGGGGCGGCTTTCTCACATGCTGAGACTCATATATCTGAAGATATAAGGGACTCTGAGGCTCGACCTGTGATGGTTTACATCCATGGAGGCTCCTATATGGAGGGCACTGGGAACATGATGGACGGCAGCGTGCTGGCCAGTTATGGGAATGTTGTTGTCGTCACGCTCAACTACAGAATTGGAATATTAGGCTTCCTCAGTACTGGTGACCAGGCAGCAAAAGGAAACTATGGACTCCTGGACCAGATTCAAGCTCTCCGTTGGATCAGTAAGAACATTGGTTACTTTGGAGGAGACCCAGGTCGCATCACAGTCTTTGGATCTGGAATCGGTGCTTCATGTGTCAGTCTGCTAACTCTGTCCCACCACTCAGAGGGTAAGAATCACCATCTCAGTCATCAGTCATTTAATCAATACAGATTCGTTGTACAGATATGCAGTTATACACTACGCATGCTGGCCGAGAGGGTTGGCTGCAATGTGCTGGACACTGTGGACATGGTCTCCTGCCTGCAGAAAAAGAGTGCAAGGGAGCTGGTGGAGCAAGACATCCAACCTGCCAGATACCGCGTCGCTTTTGGTCCTGTCATTGACGGAGACGTCATCCCGGATGACCCAGAGATCCTGATGGAGCAGGGCGAGTTCCTTAACTACGATATAATGCTGGGTGTTAATCAGGGAGAAGGCCTGCGCTTTGTGGAGAACGTGATGGATCTGGAGGACGGCGTGTCTGGCAGTGACTTTGACTTTGCAGTGTCAGACTTTGTGGACAGTTTGTATGGCTACCCAGAAGGGAAGGACACACTGAGGGAGACAATTAAATTCATGTACACAGACTGGGCTGACAAGGACAATCCAGAGACCAGGAGGAAGACCCTTGTGGCCCTTTTCACCGACCACCAATGGGTTGAGCCCTCAGTGGTAACTGCTGACCTACACGCCCGCTATGGGTCGCCTACATACTTCTACGCCTTCTACCACCACTGCCAGAGCCTCATGAAGCCAGTGTGGTCGGATTCAGCGCACGGAGATGAGGTGCCTTATGTGTTTGGCATCCCCATGGTGGGCCCAACTGACCTGTTCCCCTGTAACTTCTCCAGGAACGACATCATGCTCAGCGCTGTGGTTATGACTTATTGGACCAACTTCGCCAAGAGTGGGGATCCTAACAAACCAGTGCCACAGGACACCAAATTCATCCACACCAAGGCCAACCGCTTCGAGGAGGTGGCTTGGTCTAAGTATGACCCCTTCGACCAGCTGTACTTGCACATTGGCCTAAAGCCTCGTATCCGTGACCACTACCGCGCCACCAAGGTGGCCTTCTGGAAACACTTGGTGCCCCATCTCTACAACCTCCACGACATGTTCCATtactcctccaccaccaccaaggTCACCCCACTGGATCCCACCCAGTCCAATGGTAAGAGGTCCGGCAGCACCGGGCGGCCTCCTGTATCCACCGCCCACATTGACGGGGACGGGAGGGAGATGGGCCCGCTGATCATGCCAAACCCGAGAGATTACTCCACAGAGCTCAGCGTCACCATTGCTGTAGGAGCGTCACTGCTCTTCCTCAACGTCCTGGCCTTCGCAGCTCTGTACTACCGCAAGGACAAGCGCAGTCGGCAGGACACCTCCCAGCAGCCCAGTCCCCAGCGTGACAGCAAAGGCAACAACGTGAGCCACACCACCACTGTAGACGAGACCCTGTCCCAGCAAAGGAACCAGTGTGAAGCCCTTCACAATCCTCTTCATGTCTCGCCCAGCTTGGACTACTCACTGAGCCAACGGCGCTCCCCTGACGACATCCCTCTGATGACCCCCAACAACATCACCATGATCCCCAACTCCCTGATGGGCCTCTCCAACATGAGTCCATACAGCACCTTCCCTGCTGGTTACAGCTCTGCAGGCCTGCCAAGCACCCACTCTACCACTCGGGTATAGCCTGGCTGGAGACGGGAGGAGAACCGCGACGTACATAAAACATGGAAATGTAAAGCTGTATTTAGGATGTGTAGGTAAAATAGGATTGAATATGTTTGTTCTGTCTTTTCCAAAGGTGTACAACCGCCAACATCCTGCCTTTGCTCTCTCATAATAGGAAGTCTAACTGCAGAGTCATTTTATAATAATCACTTTCAAAggcagacaaaaagaaaaagtgcaTTTCATTTTCCACTTTGGCTTTTTTGGAACTTTACCTAGTAAGAACTTAGTATAATGTTTATACAGTTGGATTTGTATGGGAAGCTTTTTCTTACTCTGTGATATCGATTTTGATCTCGTGGAACGAAGTGACATTACTCGTGGTGGACAGTGATGAGATCTGGGAAAAGCTGAAAagcagtattattattattattattattattatcaagcTATTTTATACATATTTCTCATCGTACATTGCTtattatgaaaatgtatttttactgTAATTACTTTTAAATGCCTTGTAACTCGCTCATATAAAGAATTACTGTGGAATCAAGTTGTACTCAAATACTGGTCACACACGTGGTAAAAATGTCCAGTTTATCCAAAATATTTCTATCTGGTAGTGCAAAATATAGcactcctctgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgagaaattcgctacaaaatgtaaatttggcATTGTTTGAAATTAATCATTTAGTTTTGCATTTGTAGTGTTGTGTAATCTATTGTAGTCTATTTGAGTATCCTTGCTACATTTTTGTTTCACGTGTCTTCAATTTTGCTTAATACATTGTAGGAATATAACTTCTGCTTTACTATAAAAGAGAATtgcttaaaatgtgttttcctaCTCCAACCAACTCATGGTTCTTATGGCTTGGCTTCTTTGTACAGAATAAACTTAGACCAACATTTTATTTGTCGTTTGTTTACGAATACTGTAAGGTCTTCGGAAAGATAACTGTAATTATATTGTAATTGTATGTATACCAACTCAATAATTCACATTTAAAGGGAGTTTGATGAAACATACAGATTATTGCTCCTACTCCAAGTCGTTTGGACCCCGTGCATACCAAGATATATGCAGGGGTCAATACTCTTTACTGAATAGAAATGATGGACATCAAACTTTGAGATTTGATTTCTTTGAACCTATCATAATGTTGTTTAATCTAAATGAGACAACTATTAAAAGATTTTTGGAACTAAA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228084 lncRNA downstream 32079 23763547 ~ 23764139 (-) True G168238
TU227962 lncRNA downstream 189913 23605559 ~ 23606305 (-) True G168161
TU227913 lncRNA downstream 341152 23450693 ~ 23455066 (-) False mink1
TU228248 lncRNA upstream 293634 24105582 ~ 24108489 (-) True G168351
TU228274 lncRNA upstream 361878 24173826 ~ 24174101 (-) True G168365
TU228357 lncRNA upstream 514483 24326431 ~ 24327158 (-) True G168431
TU228390 lncRNA upstream 517561 24329509 ~ 24330155 (-) True G168452
TU228443 lncRNA upstream 583828 24395776 ~ 24398400 (-) False radx
XM_039777381.1 mRNA downstream 2991 23787760 ~ 23793227 (-) False plp1b
XM_039777380.1 mRNA downstream 4121 23787760 ~ 23792097 (-) True plp1b
XM_039777379.1 mRNA downstream 11813 23776565 ~ 23784405 (-) False LOC120543949
XM_039777378.1 mRNA downstream 11813 23776565 ~ 23784405 (-) False LOC120543949
XM_039777377.1 mRNA downstream 11813 23776565 ~ 23784405 (-) True LOC120543949
XM_039777236.1 mRNA upstream 108616 23920564 ~ 23948860 (-) False thoc2
XM_039777234.1 mRNA upstream 108616 23920564 ~ 23948860 (-) True thoc2
XM_039778133.1 mRNA upstream 137468 23949416 ~ 23968991 (-) False stag2a
XM_039778132.1 mRNA upstream 137468 23949416 ~ 23968991 (-) True stag2a
XM_039778666.1 mRNA upstream 157545 23969493 ~ 23971472 (-) True LOC120544714
TU227963 other downstream 178097 23617275 ~ 23618121 (-) True G168162
TU227941 other downstream 195944 23596899 ~ 23600274 (-) False rnf167
TU227697 other downstream 642902 23150844 ~ 23153316 (-) True LOC120543557
TU227610 other downstream 985766 22809714 ~ 22810452 (-) True G167902
TU227368 other downstream 1327625 22466583 ~ 22468593 (-) False mepcea
TU228135 other upstream 109312 23921260 ~ 23925815 (-) False thoc2
TU228137 other upstream 109312 23921260 ~ 23925815 (-) False thoc2
XR_005636406.1 other upstream 110685 23922633 ~ 23948860 (-) False thoc2
TU228215 other upstream 162606 23974554 ~ 23976321 (-) True LOC120544713
TU228489 other upstream 680638 24492586 ~ 24496582 (-) False LOC120543987

Expression Profile