LOC120543557


Basic Information

Item Value
gene id LOC120543557
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23150844 ~ 23153409 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU227697
atctATCGATTTTCACAACTAAGACAATTCACTTCTTACATTTCACTTCTAACAAGTGGCTCAATCAGTGTTTAAATCCAATCGTTACACCCCCCCGCCAGTAGGGGAAGACCgtgcctctgctctcaggtgaccGATTCAAGTCCTGTCCTCCGGACTTCCGTTTGCGTTTGATACGCTACACCAACggacaaagaaagaagattTTATTTGCTTCGCCAAACGATCTCACGAAAAAatgacTCCAGTCCACAAGCAAGAAAGCATTCCAGGACGGAGTGTGTGTCTAGAAGCCCTGTCTGTCAGTAGACATCACTGCCACCACCACCTGcatATGAGTCAACGCCACACAGGAAACCAGCCGGTCGCCCAGAGCTGGATGGGTGTATTCTAACGCAAGCTCGGCCTGCCACTTCATCTTGGGACCCAGTTGAAGcaacttttcCTGACAAGCCCGGAGGTTCGACCGGAGGTACTGCCATCCGTCGCATGCTACGGCGAGTCGCAACCAATGATGTTCTAAAACTATATATCCTGCGGGGCAGAAAGGCAAAGaaggccttccaggacctgactatctgcagggttataacagCGGCCTCCCAGAAAAACTTCCCCgcgctgactgcagcagacACGGAGGACTTGATTGGAAGTTTGCCCCACACAGACGgtcagctgagaaggactgagccttcaaaaccatggagctctattttttttattttttttgcgaaagcaagagctgttggccatcttctacactgctgccatcctcctgcctcctcccctctgtcGGGCGCAacagatccctgcacacaaaa
>XR_005636364.1
acttttaGGCTGAAATCAATTCTGCTAAAAACTGtacttttgtgcttgatttcgttgttttaactgtattaggtgaaaatacttaaaacaagaatctATCGATTTTCACAACTAAGACAATTCACTTCTTACATTTCACTTCTAACAAGTGGCTCAATCAGTGTTTAAATCCAATCGTTACACCCCCCCGCCAGTAGGGGAAGACCgtgcctctgctctcaggtgaccGATTCAAGTCCTGTCCTCCGGACTTCCGTTTGCGTTTGATACGCTACACCAACggacaaagaaagaagattTTATTTGCTTCGCCAAACGATCTCACGAAAAAatgacTCCAGTCCACAAGCAAGAAAGCATTCCAGGACGGAGTGTGTGTCTAGAAGCCCTGTCTGTCAGTAGACATCACTGCCACCACCACCTGcatATGAGTCAACGCCACACAGGAAACCAGCCGGTCGCCCAGAGCTGGATGGGTGTATTCTAACGCAAGCTCGGCCTGCCACTTCATCTTGGGACCCAGTTGAAGcaacttttcCTGACAAGCCCGGAGGTTCGACCGGAGGTACTGCCATCCGTCGCATGCTACGGCGAGTCGCAACCAATGATGTTCTAAAACTATATATCCTGCGGGGCAGAAAGGCAAAGaaggccttccaggacctgactatctgcagggttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227697 True 824 TUCP 0.51 7 23150844 23153316
XR_005636364.1 False 683 lncRNA 0.47 5 23151348 23153409

Neighbor

gene id symbol gene type direction distance location
snx19a LOC103371701,LOC104941273 coding downstream 7914 23132889 ~ 23142930 (-)
stk36 LOC107598122 coding downstream 18261 23033753 ~ 23132583 (-)
dpagt1 dpagt1 coding downstream 186326 22957914 ~ 22964518 (-)
LOC120544448 hinfp coding downstream 193214 22952337 ~ 22957630 (-)
abcg4a abcg4 coding downstream 203927 22927908 ~ 22946917 (-)
ubash3ba ubash3b,LOC100698757,LOC102195786,LOC101469509,LOC102787002 coding upstream 86646 23240055 ~ 23262531 (-)
f11r.1 NA coding upstream 110062 23263471 ~ 23273223 (-)
LOC120543864 LOC103395707 coding upstream 141997 23295406 ~ 23312307 (-)
mrps31 NA coding upstream 159990 23313399 ~ 23318371 (-)
LOC120544729 NA coding upstream 177058 23330467 ~ 23335287 (-)
G167970 NA non-coding downstream 1439 23148941 ~ 23149405 (-)
G167945 LOC103359643,LOC102303727,LOC102193670,LOC102789144 non-coding downstream 117765 23029611 ~ 23033079 (-)
G167944 NA non-coding downstream 127930 23022453 ~ 23022914 (-)
G167929 h2afx,LOC104950138,LOC106516344,LOC100693699,LOC107677420,LOC105929328 non-coding downstream 163707 22986484 ~ 22987137 (-)
G167912 NA non-coding downstream 304598 22844032 ~ 22846246 (-)
LOC120544733 NA non-coding upstream 11098 23164507 ~ 23234317 (-)
G167987 NA non-coding upstream 27709 23181118 ~ 23181472 (-)
G168041 LOC103372846 non-coding upstream 170089 23323498 ~ 23325337 (-)
G168161 NA non-coding upstream 452150 23605559 ~ 23606305 (-)
G168238 NA non-coding upstream 610138 23763547 ~ 23764139 (-)
si:ch211-117m20.4 LOC104950135,LOC102215356,LOC102305874,LOC101475389 other downstream 199108 22949507 ~ 22951736 (-)
zmp:0000001168 sipa1 other downstream 237929 22879716 ~ 22912915 (-)
G167902 NA other downstream 340392 22809714 ~ 22810452 (-)
mepcea mepce,LOC103353310,LOC101485584 other downstream 682228 22460531 ~ 22468616 (-)
chrdl2 chrdl2,LOC102798861 other downstream 704088 22440311 ~ 22446756 (-)
slc12a9 slc12a9,LOC103370084 other upstream 273379 23426788 ~ 23437928 (-)
mink1 mink1,LOC100692298,LOC102200963,LOC107746403 other upstream 297284 23450693 ~ 23485871 (-)
rnf167 rnf167,LOC102777964,LOC102289272,LOC101483611 other upstream 443490 23596899 ~ 23603892 (-)
G168162 NA other upstream 463866 23617275 ~ 23618121 (-)
nlgn3b nlgn3b,LOC103367236,LOC101487455,LOC104954573 other upstream 642809 23796218 ~ 23811948 (-)

Expression


Co-expression Network