si:ch211-117m20.4 (LOC104950135,LOC102215356,LOC102305874,LOC101475389)


Basic Information

Item Value
gene id si:ch211-117m20.4
gene name LOC104950135,LOC102215356,LOC102305874,LOC101475389
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 22949507 ~ 22951736 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU227647
ATTAACTGTGTGTAGAAGATTAGGCAGCACACAGAGCTTACTTGTTACTTACCGCTCTCTGCGTCTTCCCTCTGCAGTCAGTGAACTCAGCTCTACTGGGACAGCTTCTAATGACTTCATATCTGTTGAGTTTGCAATGAATGAAAATGTATAGAATGTTGCTGCACGGCAATATGACTTAGACTCAGTTCCCAGATCCATCTGCGGTTTTTCCACAGAAACTGATTGCATCTGAAGATGGGCACGATGAGGTTATATCCactgctgttgctgttgtttggGTCCTTCCAAAGAGCCATTTCTCAGTTTCCTGGATGGATTGGTGAGGTGGAAGGTAGTGGTAAGACCTCCTGTAATGGCAGTATATGTTATTTTTCAATGATGTTCTGTTCTCTAAGACAGGTTAATGGATCCCTGTTTAACAATAAGATCTTTCTTACGCTTGGccttgaagcctgaaaatatttcCAGTATGAGGTTTGCATGGAAAAACTTTAAGAACCATTATTACTTTATTATATGGATGTTTGGGAGTTGTCCAGTTGTAGTATATTAAAAAgcgaataaaaaatgtttttctaggTGAGACAGAATGGATTTCCCAACCAGATTTCATAGAAGACATATATTGGTCCGGGTCAGCGCCCCTTTGTTTAGGAGGTTGTAAGGCGCGACACCAGGAGCTGAGGAGAGATCGCTGTGGAGACTCAAGCTGCTGCTGGCTCGGCTACAAGTCCCTGTGCAGGGTGAACTGTGGGAGGCCCGATGTGGACTATAATGGACAAGTGTATGGTAATGACTGGTGGGTGGGCTCTGTGGTGAGGTACTCCTGTCGCCCTGGCTTCATGCTGGTGGGAAACCCTACCAGATCTTGCCAGCCTAATGGCCTCTGGACCCAGAAACCTACCTGCCTCAGAATGTGTGCGCGGGGACGCATTGAAATCAGTGAGAGTGAACTGAATGGGACTTGCAACTCCACCTGCGCATACAAGAGCTACTTTGGCCCACCCAAACAAGGCTGCACTCGGATAGACAACTGTTATAAGAAGGAGACTGGCTGGAAGCGGTTCTTTGCGCTGTGTGTCCCTTGCATTTGTGACTGCGCTTTATCATGTGGTGAGAAGCTTCCCCGCCACACTGTCGAGCACAATTGATGAACTGATGTAAAGTGAGAATGTTGCAATGTGTCAGTGAAATTACCTTGACTGTGGTTAATTATTGCTTCAAACATGAATTTGCTGTCTTTCTTTAAAGAAGTCCATGCAAAGAAcacttttgactttttattttttgcatttaacATTTACAGGCTAAAACATGGAAGAACAGTTAGATTAGTGAGATATACACAGCTTGTACACCGCAAAGCCACGCTATGGTCTTGCTGCTTCATCCAATTGTGTAGACAAATCACTCTGCCTCGTTGCTCCTCCTCTTAGTCCATCTGTCTTGGCGGAAGATGAAACCTTAATCTTGTTTCAAAGGGAGGAGCTTTGGTCGGGGAGGTCGAGTCAGAATTAACACAGAGTGTTGTAGACCTTATAAGCAAATTGTTTTATAAGTAGTAGACTGtgcattttttaatatttaaattatttgttgTGGAAAAATggcacatttatttttgttgtcaaatcaaatctttatttttatatagaTGGAATGCTTGAATCTGCAGTCATTTCCTGCTGTCGTAAGCTGTTGCCACAGTTGTATGCATCTCACTTCCCAGTGTTATTTAACCTTTCTGCACTCAAACAATTTTGATTGGCATAACGCTTCCAGGCATATGATATTTCTTTGTATATTGTCTGTGTAGTCTTCAAATTATTTGTTGTATTCATTACTAATACCCCATCTATATTTAAAGTTAAAAAGCATTCACAAAATGTTAACAAATGTTGCATATATTTTTCAAAGAGTGCCATtatgtgattgtttttttcatatgtttGATATTTTGCAAGCCAGTTGAGTGGAGTTTGTAAAATTTGATGCAAATTATCTGATAAATGACATTGCTCCTGACT
>XM_039776647.1
AGAGCTTACTTGTTACTTACCGCTCTCTGCGTCTTCCCTCTGCAGTCAGTGAACTCAGCTCTACTGGGACAGCTTCTAATGACTTCATATCTGTTGAGTTTGCAATGAATGAAAATGTATAGAATGTTGCTGCACGGCAATATGACTTAGACTCAGTTCCCAGATCCATCTGCGGTTTTTCCACAGAAACTGATTGCATCTGAAGATGGGCACGATGAGGTTATATCCactgctgttgctgttgtttggGTCCTTCCAAAGAGCCATTTCTCAGTTTCCTGGATGGATTGGTGAGGTGGAAGGTAGTGgTGAGACAGAATGGATTTCCCAACCAGATTTCATAGAAGACATATATTGGTCCGGGTCAGCGCCCCTTTGTTTAGGAGGTTGTAAGGCGCGACACCAGGAGCTGAGGAGAGATCGCTGTGGAGACTCAAGCTGCTGCTGGCTCGGCTACAAGTCCCTGTGCAGGGTGAACTGTGGGAGGCCCGATGTGGACTATAATGGACAAGTGTATGGTAATGACTGGTGGGTGGGCTCTGTGGTGAGGTACTCCTGTCGCCCTGGCTTCATGCTGGTGGGAAACCCTACCAGATCTTGCCAGCCTAATGGCCTCTGGACCCAGAAACCTACCTGCCTCAGAATGTGTGCGCGGGGACGCATTGAAATCAGTGAGAGTGAACTGAATGGGACTTGCAACTCCACCTGCGCATACAAGAGCTACTTTGGCCCACCCAAACAAGGCTGCACTCGGATAGACAACTGTTATAAGAAGGAGACTGGCTGGAAGCGGTTCTTTGCGCTGTGTGTCCCTTGCATTTGTGACTGCGCTTTATCATGTGGTGAGAAGCTTCCCCGCCACACTGTCGAGCACAATTGATGAACTGATGTAAAGTGAGAATGTTGCAATGTGTCAGTGAAATTACCTTGACTGTGGTTAATTATTGCTTCAAACATGAATTTGCTGTCTTTCTTTAAAGAAGTCCATGCAAAGAAcacttttgactttttattttttgcatttaacATTTACAGGCTAAAACATGGAAGAACAGTTAGATTAGTGAGATATACACAGCTTGTACACCGCAAAGCCACGCTATGGTCTTGCTGCTTCATCCAATTGTGTAGACAAATCACTCTGCCTCGTTGCTCCTCCTCTTAGTCCATCTGTCTTGGCGGAAGATGAAACCTTAATCTTGTTTCAAAGGGAGGAGCTTTGGTCGGGGAGGTCGAGTCAGAATTAACACAGAGTGTTGTAGACCTTATAAGCAAATTGTTTTATAAGTAGTAGACTGtgcattttttaatatttaaattatttgttgTGGAAAAATggcacatttatttttgttgtcaaatcaaatctttatttttatatagaTGGAATGCTTGAATCTGCAGTCATTTCCTGCTGTCGTAAGCTGTTGCCACAGTTGTATGCATCTCACTTCCCAGTGTTATTTAACCTTTCTGCACTCAAACAATTTTGATTGGCATAACGCTTCCAGGCATATGATATTTCTTTGTATATTGTCTGTGTAGTCTTCAAATTATTTGTTGTATTCATTACTAATACCCCATCTATATTTAAAGTTAAAAAGCATTCACAAAATGTTAACAAATGTTGCATATATTTTTCAAAGAGTGCCATtatgtgattgtttttttcatatgtttGATATTTTGCAAGCCAGTTGAGTGGAGTTTGTAAAATTTGATGCAAATTATCTGATAAATGACATTGCTCCTGACTGCCA
>XM_039776648.1
GAGCTTACTTGTTACTTACCGCTCTCTGCGTCTTCCCTCTGCAGTCAGTGAACTCAGCTCTACTGGGACAGCTTCTAATGACTTCATATCTGTTGAGTTTGCAATGAATGAAAATGTATAGAATGTTGCTGCACGGCAATATGACTTAGACTCAGTTCCCAGATCCATCTGCGGTTTTTCCACAGAAACTGATTGCATCTGAAGATGGGCACGATGAGGTTATATCCactgctgttgctgttgtttggGTCCTTCCAAAGAGCCATTTCTCAGTTTCCTGGATGGATTGGTGAGGTGGAAGgTGAGACAGAATGGATTTCCCAACCAGATTTCATAGAAGACATATATTGGTCCGGGTCAGCGCCCCTTTGTTTAGGAGGTTGTAAGGCGCGACACCAGGAGCTGAGGAGAGATCGCTGTGGAGACTCAAGCTGCTGCTGGCTCGGCTACAAGTCCCTGTGCAGGGTGAACTGTGGGAGGCCCGATGTGGACTATAATGGACAAGTGTATGGTAATGACTGGTGGGTGGGCTCTGTGGTGAGGTACTCCTGTCGCCCTGGCTTCATGCTGGTGGGAAACCCTACCAGATCTTGCCAGCCTAATGGCCTCTGGACCCAGAAACCTACCTGCCTCAGAATGTGTGCGCGGGGACGCATTGAAATCAGTGAGAGTGAACTGAATGGGACTTGCAACTCCACCTGCGCATACAAGAGCTACTTTGGCCCACCCAAACAAGGCTGCACTCGGATAGACAACTGTTATAAGAAGGAGACTGGCTGGAAGCGGTTCTTTGCGCTGTGTGTCCCTTGCATTTGTGACTGCGCTTTATCATGTGGTGAGAAGCTTCCCCGCCACACTGTCGAGCACAATTGATGAACTGATGTAAAGTGAGAATGTTGCAATGTGTCAGTGAAATTACCTTGACTGTGGTTAATTATTGCTTCAAACATGAATTTGCTGTCTTTCTTTAAAGAAGTCCATGCAAAGAAcacttttgactttttattttttgcatttaacATTTACAGGCTAAAACATGGAAGAACAGTTAGATTAGTGAGATATACACAGCTTGTACACCGCAAAGCCACGCTATGGTCTTGCTGCTTCATCCAATTGTGTAGACAAATCACTCTGCCTCGTTGCTCCTCCTCTTAGTCCATCTGTCTTGGCGGAAGATGAAACCTTAATCTTGTTTCAAAGGGAGGAGCTTTGGTCGGGGAGGTCGAGTCAGAATTAACACAGAGTGTTGTAGACCTTATAAGCAAATTGTTTTATAAGTAGTAGACTGtgcattttttaatatttaaattatttgttgTGGAAAAATggcacatttatttttgttgtcaaatcaaatctttatttttatatagaTGGAATGCTTGAATCTGCAGTCATTTCCTGCTGTCGTAAGCTGTTGCCACAGTTGTATGCATCTCACTTCCCAGTGTTATTTAACCTTTCTGCACTCAAACAATTTTGATTGGCATAACGCTTCCAGGCATATGATATTTCTTTGTATATTGTCTGTGTAGTCTTCAAATTATTTGTTGTATTCATTACTAATACCCCATCTATATTTAAAGTTAAAAAGCATTCACAAAATGTTAACAAATGTTGCATATATTTTTCAAAGAGTGCCATtatgtgattgtttttttcatatgtttGATATTTTGCAAGCCAGTTGAGTGGAGTTTGTAAAATTTGATGCAAATTATCTGATAAATGACATTGCTCCTGACTGCCA

Function

NR:

description
PREDICTED: CUB and sushi domain-containing protein 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227647 True 2030 lncRNA 0.41 3 22949511 22951736
XM_039776647.1 False 1760 mRNA 0.42 4 22949507 22951704
XM_039776648.1 False 1753 mRNA 0.42 4 22949507 22951703

Neighbor

gene id symbol gene type direction distance location
abcg4a abcg4 coding downstream 2590 22927908 ~ 22946917 (-)
kat5a kat5 coding downstream 23125 22917102 ~ 22926382 (-)
LOC120543586 LOC102792026,LOC101478344,LOC102213107,LOC100696094,LOC102309081 coding downstream 78866 22847163 ~ 22870641 (-)
wdr44 wdr44 coding downstream 291944 22645085 ~ 22657563 (-)
lrch2 lrch2 coding downstream 320066 22594826 ~ 22629441 (-)
LOC120544448 hinfp coding upstream 601 22952337 ~ 22957630 (-)
dpagt1 dpagt1 coding upstream 6178 22957914 ~ 22964518 (-)
stk36 LOC107598122 coding upstream 82017 23033753 ~ 23132583 (-)
snx19a LOC103371701,LOC104941273 coding upstream 181153 23132889 ~ 23142930 (-)
ubash3ba ubash3b,LOC100698757,LOC102195786,LOC101469509,LOC102787002 coding upstream 288319 23240055 ~ 23262531 (-)
G167912 NA non-coding downstream 103261 22844032 ~ 22846246 (-)
G167905 NA non-coding downstream 127780 22821471 ~ 22821727 (-)
G167903 LOC103353295 non-coding downstream 134930 22811589 ~ 22814577 (-)
G167816 NA non-coding downstream 188960 22759200 ~ 22760547 (-)
G167801 klhl13,LOC104946894,LOC102794736,LOC106603113 non-coding downstream 249537 22691627 ~ 22699970 (-)
G167929 h2afx,LOC104950138,LOC106516344,LOC100693699,LOC107677420,LOC105929328 non-coding upstream 34748 22986484 ~ 22987137 (-)
G167944 NA non-coding upstream 70717 23022453 ~ 23022914 (-)
G167945 LOC103359643,LOC102303727,LOC102193670,LOC102789144 non-coding upstream 77875 23029611 ~ 23033079 (-)
G167970 NA non-coding upstream 197205 23148941 ~ 23149405 (-)
LOC120544733 NA non-coding upstream 212771 23164507 ~ 23234317 (-)
zmp:0000001168 sipa1 other downstream 36592 22879716 ~ 22912915 (-)
G167902 NA other downstream 139055 22809714 ~ 22810452 (-)
mepcea mepce,LOC103353310,LOC101485584 other downstream 480891 22460531 ~ 22468616 (-)
chrdl2 chrdl2,LOC102798861 other downstream 502751 22440311 ~ 22446756 (-)
zbtb20 zbtb20 other downstream 699129 22218060 ~ 22250378 (-)
LOC120543557 NA other upstream 199108 23150844 ~ 23153409 (-)
slc12a9 slc12a9,LOC103370084 other upstream 475052 23426788 ~ 23437928 (-)
mink1 mink1,LOC100692298,LOC102200963,LOC107746403 other upstream 498957 23450693 ~ 23485871 (-)
rnf167 rnf167,LOC102777964,LOC102289272,LOC101483611 other upstream 645163 23596899 ~ 23603892 (-)
G168162 NA other upstream 665539 23617275 ~ 23618121 (-)

Expression


Co-expression Network