RNA id: XM_039777378.1


Basic Information

Item Value
RNA id XM_039777378.1
length 6072
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC120543949
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23776565 ~ 23784405 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTCTGACCTGCATTGGAAGATGAACACAACAAATCACATAGGACACCAGCATATGAGCTGAGTGGTAAAAAAAGAAGGGGCCAGCTACATTGATTGATGAAGCAAAGCTGACAAATAGAGCCgtaaatgtcaacacaaagctTGAGGGTGTGGAGATGATTTCTTGAACAAGGAATGTGATCCAGTTACATGCTTGAGTCAATTCAGTCCCAGTTTGTGTCTATTGACTTTGTTGATAATAgatgagagacacacacaaatggatTGGGTCAATTATGCTTGCAATAGCTAAACATCTTGATTATGATGTAACTCTTGAAAGATTGTAAGGTCATGGCCCACCTGCACACTAAAAAAATTAACCATGTGAACTTTTTCATTCATTAAGTGACTGGAACTAATTATTCAAATCAATTGCCATGGTGTTGTCTTCAGAAATGGCAATAGATAAAGATGTATCTTAATCTGTCGAGGAAAGGTACACAATACTCTAATATCAAATGCTCTATATCTAGCTAATTAGGTAAGATGGTATTAACCTAAAAATATCCAAAACCAACCAAGAAGGAATAACACATACAACCATGTTGGAGTGATATAGAATGATAGTGTAGTGAAACCCTTAGCCTTGTTTTGTTATCTATTTTATAACAATAGTTTCACGTGGTATAAGCATTGTGATGCTTAATATTGATTTTATCTGAATATCTGTAAAGTTAGACACTTATTTTTGTAACAGGaatttcaattattttattttgaagacaCTGTCACTTAACTTCCGTTTTTTCCGCTGGCTtgtgatgctaacgttagctgtttcATGCTAGGCAGGGAAACATGCGGTTCTGTTAAAATATAACCGCCTCATTTAAACTTTCTGCAACCGACAGACATGTAGTGGTGAATTTCGACTACAGACTGTCACTTGGTTTGTATTATTAAGCGTAAATGTGTCtgtactgtagctagctagctagctagtttaaCGGTTACAAACAGTAACGTTACGGTGCGCGACGTCACTCACAACCACCACCACAGGACGAGTCCGAGTGTCCCCCACACACTACTAGCTAAATTTCGACGACTCTCCAAGACCAAGAAAATGCCATCGAGAAATCATCTTGACAAAAttgggaggaagaagaagaagaaatggacAGAGGAGGCCATGGAACGTGCTCTGATCGAGGTGAAGTCGGGTAGGTGTACGGTGAGACGGGCTGCCAAAGAGTTTGGAGTCCCTAAGTCTTCACTGGGGGACAGAGTCAGTGGACGGGTGACACCAGGGAGTCGCAGCGGGCCAGCTCAGCTTATAACATCTGCAGATGAGGAGCTGTTGGTGGAGTTCTCTTTATACATGTCGAAGCATGGATTCCCACTGACGAAACAACAGCTGGTGTCCTTTGCCTCGTCCATTTATAAACGGCAACATCGGAGGGTGGCATTTTCTAAACTAGGCCAGACCTGGTGGCTCAATTTTAGAAAAAGGCAAGAAAAGAATATAACCATTCAGCCAGCAGACAATGTTGTCCGTGGGAGGACGGTTAGTGTGAGGAAGGAAGCAGTGGATCAGTTTTTTCATTTACTCAGCACTGTCATGGAAGCTCATGGGCTCCGAGACAAGCCTCTTCAAATCCTTAACTGCAACGAGGTGGGCTTTCATCTGGGCAGGAAGAGGGTGATTCTCCCCAAATCTGCCAGTCTGGGCTGCAAGCCAACGCCAGGCTCGAGGGACCACATCTCGATCCTGGCTTGCTTTAGCGCAACTGGAGAGGACATTCCCCCATTTATTATCTACTCAAAGGCATACCCAGGGGGAGTATGTTACAAGACTCAAGGGCCTCCAAATGCCCTCTATGGATGGTCAGACTCTGGCTGTATAAACTCTGACCTTTTCAAGAAATGGTTCCTCAAACACTTCCTCCTACACACGCCAAAGGAGCGTCCGCTGCTGCTGATTTTCGACGGCCACAAGTCTCCCATAAACCTTGAGGTGGTGGAAGCAGCTCGTAAGGAGGATGTGATCCTTCTGTGCCTTCCACCTCATTGCTCTCACATCCTGCAGCCACTCGACGCGGGTCTCTTTGTTCTCCTTAagcagcattttgcagcacTCATAGGTGATGGTTGTGCCACCGATACTCACTATGCAGTCAGCAAGAAGGAGTTCTCAGGTGTGTTTAAAGAGACGTATCAGgtagtgaaggaggaggagggtgtcAGGATTGTGAAGGAAGGCTTTAGGAAATGTGGCATCTACCCGCTAAACCACTTCGCCATCAACGAGGGTCATTTAATGCCATTGCACAGCATGGGCCCTGCAGCTGGTCCCTCCTTGTCCACATCAGCACAGGGGGTGCACACTGTAGGAGACGTCATAGCTGCTGGACCCTCCTCCTAACTCATAACTGCTCAAGACTATCAGTCAGCCATCAGTACATTTGAGGAAAGCGAGTGACTGCATAATTTAACAAAACTTGGCTAGTTCTTTCATTTGAAATACACTCCAGCTTGAGTATTGTTCACCACCTCCTCCAGGTCCTTGCAGAGTGCTCAGTTTGTCAGCTCGCCAGATGAAAGGGGTGTTGATATTAATTACTTGTCAATGTTGTGGTCAAAGGGTTTTTAATGGAATAAGaaaggaaaaatatattttcatatacacaaaatgatgttttattttctctaaGATGTCTCTAATTCttgcatttttgtaaaatattggaCACTTTCAGGCCCCTTAAAATCATTCAAATGAAACaagcagagacagaaaaaaacagtgtttGGTTGAACTGCTCCCAAATCATGTCCACATTAAGGCCATAACCTGTGACAGAGGGTTAAAAATAGATATTTCTTCATTTCAGTGGATCACAAGCCAAAAAGATTGAGAACTACTACTGTACTACAAATAAACTCAAGCTCTGTCATTTTGTCTTGTGATTGATGGCCAGCTAGATAAGCAAACTAATACTAAGCAGTAGGAATAGAGACAAAGTTGTGCTTGATTTGTATTTTAGTGGAGTAAGCGGGAGGCTATTCTGtgagctagcttgctaactgttCTGGACTGATCAAACAAGCGGTTTAATAATTCAGTGTGTATTCAGCTAACCGATTCAACCATGAAAAAAAATTTACCATATTTTTAACATATTTAGATAAAAAGGAAATATTTAAAACTAAGCCACATTGTAAAGTGTTATCTTGTTTGAAACTCTCCATAAAAGTACAATGTGAAAATGTAGTTAGATGTTGAGGTCTGGCAAGATGTATTATAGTCCAGGATCCATGCAGCAGATTTGCAAAAAAAAGATGTAGACATAAAACTTATTCCTAAGTTATTTCTTACTTGTGATGTTCAGGCCTGCTATGAAACAAGCTGAGAGACTGGAGGggtaacaatgttttttttatactgatATAGAAGGAAAACGATAACATCTGACTCAATTCCATTGTGAATCATATCCCTTTGCTTGAGTATTCTGAATGCACTTGGCCTATTCTGTAGTTACAAAAGGAATTTATATTGTGTAAAATAACGAAGAACTATTGAGGAATGTTGAGCCCGTTTTTTAatttggggagggggggattTTAACGTAAGTGTTCAAATATTTTTCATTTCCATAGAATAATGGACCCTGTATGACCTCAAGGAGAAAATAACGCAGAAAAAATGTAAATTGaaatatatgaaatattttTGCATCACAAATGTGTCCATAGGCTTAATAatttacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtaacaTGTGATGTGATGGCAATGCAATAGGTACAGCTGGCAACAATACACAGGCAGGCAATGTATGTATTAATAATTGTGATTACTGTGTAAATGAATGTTTCATCTCTACAGTCTAAACAAAGTATGATTAACTATATTACAGGAAACCATGACTTTTTGTGCTCAGAAAACAATGAGATTAGTATTTAACACATGATCACTAAAAATGGATGGCTGGTAAAACAGCTGAAATTGGGGATTTATGTCAGGTTTATGTGTAATTGTCATTAGGAAGCCGAgaggaaatactcaagtaagaATTGTGTTCAGATCAATGATCATGAACCAGCTAAAGCACAAATCCGCCTGCAGTGCACTGTAGGTATAAATGGGTGCAGCAGAGCTGCCCAGGGCCAAGTTAATGTTAAGGTATGTTAACATCACAGGTGGTGATTGGTGCCTGAACCCTTTATAGTTTTTTGTATTCACTGACACAACCGAGTCAACGGCAAACTTCACTTTGACCTGCAAAATGTGTCATGGCAACACATTTTATAACCCCTGCCGATGTTGCAGGGGGTctaatattgaaatattacagtttaaatttttttttgcttttctgcATTTTTCAACCCAAAAACTAGTTTGTTAACTAAGTCTATAACAAATGacaatttatacattttatttttaaagctatagtacacaactttttcatattaatgaacgtccgttacattcaagccattgccgaATGAgtactgtatttctcagtatggctatgtttacaaaatggtgtagcCCGGCGACATTTGTGCGCAGCAGCTCGAGTGACGTGTTCTACGTCACCGCTTagaaaggacaacagcagcgttcagcttCGGAGACAAAGAGGTCATACAAATgacaagataattacctcttatgttatttttttttaatccttagTGTCCTTGATTTGACGGGTTAAACACTACTAGcagctgcgtggaggaggggtgggggtggtgaaTGATCACTGAAGGTTTACATTGACGATATTATTGTtgccattacttagaattcctcatggtggcgacagaaactactcaCTATAGCTTTGAATATTATGTCATCAGATCTCACACTTTTACCAGTGATGTGTGTGACTGATGCATTTTGTTTGGTTGGTTTTCTTGCTTGTACTGAAATGCTCAgtacatgttcttatttatcttttatttaattttttaacatgttcaaaataaatgtaatccTATCAAATGTGAGAAACGCAGCTTTCAGAAGCACTGCCACTGAAGCACTTGTGTTGAAAATCTTCCACTGCTACAAAACATTTgaaatcagtatatatatatatatatatcataaaaaatAGCAACATCTGTTGGCCAAACCTTTATATTGCATTTATATTAATCGATAGATTAACAGTTAAGTCAGAACACAAGTGGTTTTACTGCTTTAATTATTGTTCTCTTGTTCAATAAAAGCGGCGATATCTGTCTGATACTTACTCAAATTTCTTGGCTGTGGACAGGACATATAAATTCTGTCTGACCGGAGCGGGTTTGATCTCCACACCGTGGTCCGTTCTGCAAGACCGAGGAAGTTGTGAATTTGCAGCATCTTTGTTGCATCATTTTTCTCAAAAGCTATCATTCTTCAGTGAAGTCCGCACTTTGGTGGTTTGAAACACCTTGTGCCTGTTAACATCTACAACACAAATGCACCCTTTTTGTCAGTGCTGGATACCAAGAATActtgcatacatttttttacctttaaatATTGGATTCAAGTGTGACTTACCATTTGACATGATGCTGATATTTTCTCAAATCTTCAGCCTGATGAAACTAAAGATGAAAATGTTCAAATTCATCACAGGTCAGCTGTGTCAGCGTTGTCAGAGCAGAGTGGTGTCGAGCCTCTTCTGGGTCTCTGTCTcacacaggcaggcaggtaAAGTCACTTCAGCCTGATCCCCCACCCCCTGTCATTTCAGATTCCACCCCCTGTACATCTGAAGTGACATTCCTGGATGCTGCTGTGCAGGTTAATcatgtgggtgggtgggttaCTTTTCATGACAggttgaaatatgtttttgcatttttctcCTCTTGGCTCCACATAAATATTCTTCACAAACATGCTGTTCCAGTTGGGGGATACTAGTAATCAAGAGAGGCTTGTTATTTAATCAACTTCCTTATCAGAGACTTTCAGTATCATTCAAGCAAAATGTGCATCTTCTCCAGTAAAACTGAAACAGCAACAACaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228084 lncRNA downstream 12426 23763547 ~ 23764139 (-) True G168238
TU227962 lncRNA downstream 170260 23605559 ~ 23606305 (-) True G168161
TU227913 lncRNA downstream 321499 23450693 ~ 23455066 (-) False mink1
TU228248 lncRNA upstream 321177 24105582 ~ 24108489 (-) True G168351
TU228274 lncRNA upstream 389421 24173826 ~ 24174101 (-) True G168365
TU228357 lncRNA upstream 542026 24326431 ~ 24327158 (-) True G168431
TU228390 lncRNA upstream 545104 24329509 ~ 24330155 (-) True G168452
TU228443 lncRNA upstream 611371 24395776 ~ 24398400 (-) False radx
XM_039777382.1 mRNA downstream 1783 23772240 ~ 23774782 (-) False cwc15
XM_039777383.1 mRNA downstream 1900 23772240 ~ 23774665 (-) True cwc15
XM_039777533.1 mRNA downstream 5337 23764241 ~ 23771228 (-) False mtmr2
XM_039777532.1 mRNA downstream 5338 23764241 ~ 23771227 (-) True mtmr2
XM_039777531.1 mRNA downstream 14285 23756043 ~ 23762280 (-) True fam76b
XM_039777381.1 mRNA upstream 3355 23787760 ~ 23793227 (-) False plp1b
XM_039777380.1 mRNA upstream 3355 23787760 ~ 23792097 (-) True plp1b
XM_039778004.1 mRNA upstream 11813 23796218 ~ 23811948 (-) True nlgn3b
XM_039777236.1 mRNA upstream 136159 23920564 ~ 23948860 (-) False thoc2
XM_039777234.1 mRNA upstream 136159 23920564 ~ 23948860 (-) True thoc2
TU227963 other downstream 158444 23617275 ~ 23618121 (-) True G168162
TU227941 other downstream 176291 23596899 ~ 23600274 (-) False rnf167
TU227697 other downstream 623249 23150844 ~ 23153316 (-) True LOC120543557
TU227610 other downstream 966113 22809714 ~ 22810452 (-) True G167902
TU227368 other downstream 1307972 22466583 ~ 22468593 (-) False mepcea
TU228118 other upstream 19146 23803551 ~ 23811763 (-) False nlgn3b
TU228135 other upstream 136855 23921260 ~ 23925815 (-) False thoc2
TU228137 other upstream 136855 23921260 ~ 23925815 (-) False thoc2
XR_005636406.1 other upstream 138228 23922633 ~ 23948860 (-) False thoc2
TU228215 other upstream 190149 23974554 ~ 23976321 (-) True LOC120544713

Expression Profile