RNA id: XM_039778672.1


Basic Information

Item Value
RNA id XM_039778672.1
length 1660
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120544720
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21204704 ~ 21206812 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCACAGCAGCACCAATCTCAGGCTAACCAAGAATCCGCCTCCCTCATACCCATCGTTTTTACATTTCCTCTGGAATCTCATCATGGATATCCCCATCCAGTATCCCTGGTACCGTCGGGCCTTTCCACATCGACTTTCTGACCTCTCCTTGGCAGAACCTCTCACTGATTGGCCACTAATCTGGCCCTTCCCCTGGTCCTTCCCCTGGATACGCCCTTCATTCATGCGCTGGTTCAACTGGCCCGACAATGGACACAGTGAGATGCGCATTGAAAAGGATCACTACATCATTCATGTGGATGTGAAGTTTTTCTCACCTGAAGAGCTGTCTGTCAATATCGGTGACGAGTTCATCACAGTACATGGCAAACATGAGGGCAGACAGGATGACCACGGCTTTGTGTCAAGAGAGTTTCTGAGGAAATATAGGCTTCCTGCTGGAGTGTCAAGTGCTGATGTCAACGCCAGTCTGTCATTTGATGGTATCCTTACAATCACTGCACCTCGGTCATCTTCCGGCTCAGAGCGCCCTATTCCTGTTTCCTGTGAAGATGGAAcagcaaaacagaaaatgtagaGCAGAGTCTGACGCTCCTCACACTGTTTCACTACTAATCCTAAATGctgcctgtttttatttttaacctgtTAACAGTTTTGTTGGCAGTTTAGTACACATGCAGTAGGCAGGGCATACAGGTCTAGATGTCTATAAGTGCCTTCTAACACACCAGTATCTAATTCCTAACTCACTGTTATTCCCAAGTATCTGCAAGACAATGGTGCTTTGAAATTAAAGGCTAATCGTGGAGCTTATGTAATGACAAAGTGTTGTATAGACACAGTAGGGTGAGGTGCAGGATAATGAACTTCTGAGAGTTAATTTCCCTATCACAAGCCTACAGAACTCCCTCTTTAACCCATACATCCCGATTAAAAATATTCACACCTCTGTGTATGTAAATGACACATTAAGGGCATGTAATAATTGTTTGAAAGGCATTCCCCGAATGTTATATAAGGTCTTTACTGGCCCTGCAGTTAAGTGACAAAACTGTAAACATTTGTTATTTGAACTCAAACTAACTTGCAGCACTTATTAGTTTTACAGGGAAATGCTAAAATGTCAATTTAAGGGGGTGGAAATGTAAAGACTAACTCAAAATTGTCCACTGAAGATGGTAACAGACTAAAATTGTTAAACTTAATTGCATCTACAGTACACAGTACTGTCTGAGGGTGTATGAGTAAGATGCCAACTGTGCTTTGTTTATTCTTTTAGAATAGTGTTGGTTTCAGTATGTGTGAGGAGGAGGGAGTTCTCTGGAGGCATATGCAGTCATTTTTTAGATTGTTCACTAAAAAAAAAGCCACCAAAGGACTTGGGACCAGGTGTGTGTAAAGAAGGAGGGTGAATGAGCCGTAGGGACGTAGTGGACGAGGGAGGAACTGATGTTTATCACTGGGCTCCTTTTCCACTGGGGAGCATGGCCTCTGAGCTGCTAAGGAAAGAGTGTGTGAAGATATGTGAGAGTGAATGCATAATGTGCTTGTAGATGCAAGAGTTACAGCTTTATCATTCCTTCACATTGGCAAAAACCCTCTGGCATATTaacacagaaaacaacaaatagAATAAATGTTGAAACTCAAAATCAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226650 lncRNA downstream 114257 21073073 ~ 21090447 (-) False snrnp35
TU226571 lncRNA downstream 216786 20987212 ~ 20987918 (-) False G167179
TU226572 lncRNA downstream 216786 20987212 ~ 20987918 (-) True G167179
TU226567 lncRNA downstream 221767 20981723 ~ 20982937 (-) True G167176
TU226512 lncRNA downstream 252170 20951035 ~ 20952534 (-) False G167129
TU226760 lncRNA upstream 40073 21246885 ~ 21248228 (-) True G167316
TU226829 lncRNA upstream 224028 21430840 ~ 21435916 (-) True G167367
TU226835 lncRNA upstream 239356 21446168 ~ 21447176 (-) True G167371
TU226837 lncRNA upstream 242020 21448832 ~ 21449560 (-) True G167373
TU226912 lncRNA upstream 381066 21587878 ~ 21608765 (-) True G167420
XM_039777079.1 mRNA downstream 2436 21196533 ~ 21202268 (-) True bicdl2
XM_039777076.1 mRNA downstream 12716 21188579 ~ 21191988 (-) False fdxacb1
XM_039777077.1 mRNA downstream 12716 21188579 ~ 21191988 (-) True fdxacb1
XM_039777078.1 mRNA downstream 16231 21180245 ~ 21188473 (-) True alg9
XM_039777237.1 mRNA downstream 52012 21144929 ~ 21152692 (-) False chek1
XM_039777200.1 mRNA upstream 61556 21268368 ~ 21293314 (-) True LOC120543861
XM_039777327.1 mRNA upstream 90103 21296915 ~ 21423480 (-) False LOC120543925
XM_039777338.1 mRNA upstream 90103 21296915 ~ 21423480 (-) False LOC120543925
XM_039777331.1 mRNA upstream 90103 21296915 ~ 21423480 (-) False LOC120543925
XM_039777329.1 mRNA upstream 90103 21296915 ~ 21423480 (-) False LOC120543925
TU226513 other downstream 252170 20944001 ~ 20952534 (-) True G167129
TU226514 other downstream 252170 20948842 ~ 20952534 (-) False G167129
TU226152 other downstream 1404771 19752296 ~ 19799933 (-) True G166843
TU226147 other downstream 1484981 19714639 ~ 19719723 (-) True G166840
XR_005636358.1 other downstream 1528514 19672078 ~ 19676190 (-) True haus1
XR_005636586.1 other upstream 50385 21257197 ~ 21257288 (-) True LOC120544786
TU226908 other upstream 367406 21574218 ~ 21584182 (-) True G167416
XR_005636498.1 other upstream 515506 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other upstream 515506 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other upstream 515506 21722318 ~ 21741781 (-) False brd8a

Expression Profile