RNA id: TU248840


Basic Information

Item Value
RNA id TU248840
length 2016
lncRNA type sense_over
GC content 0.39
exon number 1
gene id ches1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11764143 ~ 11869192 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAAAGACACGTCTTCAGGGAGGAGCGTGGGAGATCACTCTACCACGAGAGGCCCGAGGGTGCCACCTCTGGGCTTCGGGTTCAGGCTACATGTAGGCCAGCTGAATCACCTCTTAGGGGTGGGCTTCCGTCTTCTTCTGCCTGTACAGTGATTTTTAGGTGTTCAGTGTTTAACCCCAGTGTTATTTCAGAACACatgtgtagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtttgtgtgtccAGGAACACACACCCTTTAACAttgtgcctgcctgcctgccctcAGTACCTCTGTTGTCATGTCTATGACATGTTTAGACAGAACGTTTTCTTGTCTTTATTTATAACAGTATtgtttcttctttattttttatttttttctttctcctgtgtgtaaatgtacacgTGTCCTTATTTTCCATCGACATTGTTCAGTGTAAATTTATGGATTAGACGGGCTGTCCGGAAAGAACCTCATATCTCCTAATAGGCTACTTAAGAGTTGGattgaaaagaaagaggaatgTAGGAGATGgcataaatgacaaaaaaaaaaaaacaacgtttttttattattatttacatacagtattgttAACCCTTTGATTAAAGGAATTACTTCCCGTCGTGGATGTCAAGCTTGCATACATATGTATCTCAAGTGCCCAATCTGGAGATCAGACGggtattattttcttttcttttaaatagaTTTTGCCACTCTACACAGTTGTAGGTGTATGTCATGAAAACACTGACTTGATTGAAATCCACGAGGGCAGTAGCGAGCTTTGACATTTTTGCATCAGAAGTGATATGAATTCTGCACTGCCATTACTCGGCATGCTTTTGGTGAAACAGGAATGCATAAAAGTATTAATCCCCCGCCCCCCAACACCCCCCTCCACTTGCAGAGATGCAGTCCATATAAAAAAAGCAGCTTTGTAGGAACAAACATAGGCTGGGTTTGGTTGTAGCAGCAGTCAGacaagatttttattttttttttttttttttttaagctcaaTAGACGTTGAGTGATTGTCAAGCGAGCCAAGCAGGCAAAGAAATGCATGTCCCATCCGCTGGTACAGTCTTTTGCCACCTGTAGCATGCATTTTGTATGGTATCCATGCCgacatatattaaaaaaaaggctaaaaGGAGACACCGTCAGTGTTCTTGTTGTGTGCCATCCGTGTCTCGTCTGATATCTGTCTGAGTGCTCCCGCGGCCCGGGTCAAGCACTCCGCTGTATTCGCAGCAACAACCCACTGTTGTGGTGACTAATAACGTGTTCAGCTGGCAAGAGGCATGTGGAGGGGAGAATGTGTTGCTTTAGCAaccacctttttattttatttttttattttttttctctgactCACCCAATGACATGCAGGGAAGATGAACTCCTGACCTACGAGTCCTGGAAAAATCAGAGcaacacatataatatataccTTGGACATTTTAAAGCAAAGAAGGAAACTTCACTGCCTGAAAAAGCCCCCTAAAACAAGTGTTTGTTTCAAACCTGCCAAACATATACAATGAAACgctcaaaaaaatttaaatttaaaaaaaaaaattttttaaaatacagttgccatttttttatgttgatgtttttatgctcattttctgtttttggtTTCTCTCTGACAAAATGATCTACAATActgccattatttttttttttttttaaatttggtgaCTGTCTGAGCTGAATTTTTTGGAAAGCCATAGGTTATAGAGATGTCAAAATGCAAAACTGTTATTGATCTGTGAGATGTGACGCAGAGTGCACCCCGGGTGTCGGTTTCTTTTTACAGTAAATGTTCAATTCTCTCCTTATTGTGCAATCATATTGCCAAAGAATGATTTCAAGACCTATTTCATCACTACATGTAAATATCAACGTTGTCCAATACCgtggcaaaaaatatataaatgttgttttattttgttttccattttctgAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248811 lncRNA upstream 207212 11659672 ~ 11659891 (+) True G183735
TU248777 lncRNA upstream 217098 11647337 ~ 11650005 (+) True G183711
TU248775 lncRNA upstream 222258 11638856 ~ 11644845 (+) True G183709
TU248759 lncRNA upstream 232699 11568285 ~ 11634404 (+) True G183700
TU248841 lncRNA downstream 17477 11886595 ~ 11887137 (+) True G183762
TU248917 lncRNA downstream 305461 12174579 ~ 12178850 (+) True G183825
TU248973 lncRNA downstream 611189 12480307 ~ 12480529 (+) True G183866
TU248975 lncRNA downstream 635567 12504685 ~ 12505123 (+) True G183868
TU249015 lncRNA downstream 760171 12629289 ~ 12637536 (+) True G183890
XM_039782506.1 mRNA upstream 276557 11578169 ~ 11590546 (+) False LOC120547096
XM_039782507.1 mRNA upstream 276557 11578169 ~ 11590546 (+) False LOC120547096
XM_039782505.1 mRNA upstream 276557 11578170 ~ 11590546 (+) True LOC120547096
XM_039782862.1 mRNA upstream 323125 11536311 ~ 11543978 (+) True LOC120547310
XM_039782353.1 mRNA upstream 358231 11499969 ~ 11508872 (+) True LOC120547014
XM_039781264.1 mRNA downstream 3858 11872976 ~ 11886364 (+) False gtf2a1
XM_039781266.1 mRNA downstream 3858 11872976 ~ 11886364 (+) False gtf2a1
XM_039781263.1 mRNA downstream 4089 11873207 ~ 11886364 (+) True gtf2a1
XM_039781265.1 mRNA downstream 4091 11873209 ~ 11886364 (+) False gtf2a1
XM_039782025.1 mRNA downstream 20878 11889996 ~ 12003884 (+) False LOC120546813
XR_005637057.1 other upstream 1136321 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 1200631 10622736 ~ 10666472 (+) True G183540
TU248395 other upstream 1754742 10111237 ~ 10112361 (+) False LOC120546402
XR_005637038.1 other upstream 2545675 9296061 ~ 9321428 (+) False LOC120547211
TU248071 other upstream 2829410 9020960 ~ 9037693 (+) False LOC120546611
TU249092 other downstream 1121558 12990676 ~ 13008411 (+) True LOC120546167
TU249176 other downstream 1276357 13145475 ~ 13150078 (+) True G183994
TU249175 other downstream 1337190 13206308 ~ 13247416 (+) False G183994
XR_005636930.1 other downstream 2155366 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 2493223 14362341 ~ 14381187 (+) True G184231

Expression Profile