RNA id: XM_039781263.1


Basic Information

Item Value
RNA id XM_039781263.1
length 3076
RNA type mRNA
GC content 0.45
exon number 10
gene id gtf2a1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11872976 ~ 11886364 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAATCTCTAAGGATTGTCAGCGGGGAAAAATGGGGGTAAAGATAATGGAAAGCTCTTCGACGAGctggttttttatttatttcagtaaaatgAATCTGCTTTAACAAACAAGTCACTGTTCTATCAAATAAAGTGAGGACTTAATTTCAGTCAATCGgccattttaatcatttttcgAAACTAGATTGTTCTCTCAGATAAAGCCATCTGGTAGGAGCAATGGCTAACGTAAGAGGAGCTGTAACGTTACATAAACCTAAACTTTACAAGTCTGTGATTGAGGATGTGATCAACGAGGTGCGAGAGCTGTTCCTGGATGAGGGTGTGGATGAGCAAGTTCTTCTGGAGCTGAAAACGCTATGGGAAAACAAACTGTTGCAGTCCAAGGCAGTGGAGGGCTTCCATACGGAGGAGCAGGCAGCCCTGCAGGccgctcagcagcagcagcaggttcagcagcagcagcaggttcaGCAGCAGGTTCAACAGGTCCAACAAGTCCAGCAGGTGACCCAGCCAGCACAGGCCCAGCAAGTCATCCTGCCCCCTCAGCAGCAGCAAGCTCCCCAGCAGCAAGTCATTGTTCAGGATTCCAAGATTCTACAGCACATGAGTGCAACAGGGATGAGTGCAGCAGCTACCGCAGCAACCCTTGCGTTGCCCACAGGGGTCACCCCATACCAACAGCTCATCACCAGCCAAGGTCAGATCTTGCAGGTGGTCCGTGCTCCCAATGGGGCTCAGTACATCATCCAGCAGCCCCAGCAGCAGAtcctcctgcagcagcagatgcAGCCTGGCGGCGTGCAGGCGCCGGTCATACAGCAGGTATGCCCCATTAGACAGGTCCTGGCTCCTCTGCAGGGAGGCCTTCCCCAGCAAACAGGAGTCATCATCCAGCCGCAGCAAATTGTCTTAGCTTCAGGAAACAAAGTCCAAGGCAATACACAGGTGATGCAGGCAGCAGCTCTGACGCAGCAGCCTGGTCAGGCAGCAACAGCTCAGGTCCAGCAGGCCCAGGGTGCAGCTGCAACACAGGGCCCACCACAGGCCCAGCAGCAGGCCCAGATGCTCCAGGTGGACGGTGCCGGAGACACCTCCTCGGAGGAGGacgaggatgaggaggaggagtatgatgaagatgaggaggaggagaaggacaaGGATGGGGGAGAGGACGGGCAGGTGGAAGAGGAGCCGCTGAACAGTGGTGACGACGTCAGTGATGAGGAGGACCAGGAGCTGTTTGATACAGAGAATGTAGTGGTGTGCCAGTATGACAAGATTCACAGAAGTAAGAACAAATGGAAATTCCACCTGAAGGACGGGATCATGAATCTGAATGGGAGAGACTATGTCTTCTCCAAAGCCATTGGGGATGCCGAATGGTgaagtagaaataaaaaaaaaaaaaaaacagacgaaGCAACAGGAGCAGGAACTCTGTAACTCCTTCTATCCAGTTAACAGACACTTTTAATATCCTTCCATATCCTGTGACTGGATTCATTTCAGGAAACTTCTTCTGAGTCTTTGAGAACTCCGAGGAACCCAAAGGACTGTGAGGTACcgtatatattaaaaaaaaaaaaaaaagagagaacctGGGTGTTGTCAAAAACACTCGTCTGGCCTTGCGGGATGCGAAACCTACAAGGGTAAGGGAAAGCCTGTGAATATAGCATTCTTCATCTTTTTTGCTTCTTCCAGGCTTCTCcacgtttagtttttttttctttttccctgaGAGAATTCACGTGCATTGGAACGTAAGCATTTCACATCGTACAGGTGTAGTGGACCAGGGTGATCTGGCCTGTCCTGCCACAGGAGGGTCAGCGGTCATTCATTAGAACCCCGTAGATGAGAAACCCCTCCATGATGCACATGACTGTAGTCGGTTGACTGGATTGACTCGTGTCTACATTTAAGTCCAAACTTAGTGCCACCAGTCAGAATCAACATTTGGCTTCTGATTTTTGTTCTTGGCTCATAACTTGTCTCAATTCATGGGTAATGAAAATGGTGCTCCAGAGTGTTTTTATGTAGTgaacagtttatttttttttttttttttttttttttttgtgttcaagACAAAGAAGGTAAAATTACATGCATCCCTAAAATAACTAATAGTTGTTAAATGGCATTATTTTAATCCTCTGAGTGCTCAAtccaaaaatatttaattaattttcctCATCTGCTTCTCTGGAGCTTCATTTCATCTTTATCCAAActctttaacaacaacaaaaaggaagAACAGATCCAACACTGAATTTATTTAAGAATTGTACAAAATGTCTGAAAGTTTGTCATGTCGGTGTATCTTCTTTGCTCTTATTTTAGTTCCATGCAGCCGTCTGAAAATTTGCACTGTCAGTTTTTCAATGTGTCGTGAAATTAGTCAGTCAAGTTAATCAATAgccacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgagactGTACAGTGACTGTCAGGCTAGTGGTGAGTATGTTCATGTGTGTATGTTGATTGTGTGTTGTCACCGCTTTTCTCTGGAAATctattcaagttttttttttttttttttgcacaacccACAATCTCAAAATGTCTCGGTAGTAAATTAGTTTTTAATTAGTCATGTTTTGGTGGGGACAGGGCGATGtcctattttaatttttttttatttattcctgaAAGTTGatgacgtgttttttttttttttttgaaaggttGGAAAGCCGCACCAAACTGTGCTCTTATAATCTAATAagtgttccttttttttctctgtcggTTGGACAAAGCTACATATAGCTGGGATCCAAATAATTTCGTCCACCATATGTTCTCCTGTGCTTTCGTTTTATTCATGACTtttaaatgagaatattttctATCAAAGTGAGTTTCACTCTGGGGCCAGTGTGTTTctctgcagtttgtttttagtGCCCCTGTTGCAGCAATTTGAAATAAAGTATGTGTTTTTTGA

Function

GO: NA

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248838 lncRNA upstream 4015 11867103 ~ 11869192 (+) False ches1
TU248840 lncRNA upstream 4089 11867103 ~ 11869118 (+) False ches1
TU248839 lncRNA upstream 4495 11867103 ~ 11868712 (+) False ches1
TU248811 lncRNA upstream 213316 11659672 ~ 11659891 (+) True G183735
TU248777 lncRNA upstream 223202 11647337 ~ 11650005 (+) True G183711
TU248841 lncRNA downstream 231 11886595 ~ 11887137 (+) True G183762
TU248917 lncRNA downstream 288215 12174579 ~ 12178850 (+) True G183825
TU248973 lncRNA downstream 593943 12480307 ~ 12480529 (+) True G183866
TU248975 lncRNA downstream 618321 12504685 ~ 12505123 (+) True G183868
TU249015 lncRNA downstream 742925 12629289 ~ 12637536 (+) True G183890
XM_039781262.1 mRNA upstream 4023 11764143 ~ 11869184 (+) False ches1
XM_039781260.1 mRNA upstream 4023 11801985 ~ 11869184 (+) True ches1
XM_039782506.1 mRNA upstream 282661 11578169 ~ 11590546 (+) False LOC120547096
XM_039782025.1 mRNA downstream 3632 11889996 ~ 12003884 (+) False LOC120546813
XM_039782026.1 mRNA downstream 3632 11889996 ~ 12003884 (+) False LOC120546813
XM_039782022.1 mRNA downstream 32248 11918612 ~ 12003884 (+) True LOC120546813
XM_039782024.1 mRNA downstream 32248 11918612 ~ 12003884 (+) False LOC120546813
XM_039782023.1 mRNA downstream 32849 11919213 ~ 12003884 (+) False LOC120546813
XR_005637057.1 other upstream 1142425 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 1206735 10622736 ~ 10666472 (+) True G183540
TU248395 other upstream 1760846 10111237 ~ 10112361 (+) False LOC120546402
XR_005637038.1 other upstream 2551779 9296061 ~ 9321428 (+) False LOC120547211
TU248071 other upstream 2835514 9020960 ~ 9037693 (+) False LOC120546611
TU249092 other downstream 1104312 12990676 ~ 13008411 (+) True LOC120546167
TU249176 other downstream 1259111 13145475 ~ 13150078 (+) True G183994
TU249175 other downstream 1319944 13206308 ~ 13247416 (+) False G183994
XR_005636930.1 other downstream 2138120 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 2475977 14362341 ~ 14381187 (+) True G184231

Expression Profile