RNA id: TU249728


Basic Information

Item Value
RNA id TU249728
length 438
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G184404
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15132217 ~ 15138715 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGACAGCCAGGTGGTCCTCCCAGTCGTTGGTGAGACTCTTGTAGAACTCTCCATACTCCTCATTGGTGATGTCGTCAGGGTTACGGGTCCAGATTGGCTTGGTTTTGTTCAGCTCCTGGGCATCAATGTACTTTTCCTTgaccttcttcttcctcttgttCTTGCCATCCTTTGTGTCCTCGTCCTCGTCGGAGCCCACGTCCTCAATCTTAGGTTTGTCCTTCTCAGCAGCATCTTTATCaacttcctcttccttttctcCCTGTTCATATTCCACTTCCTTCTCCCTTGTCTTCTCCACATAAAGTGTAATAGGGTAGCCAATGAACTGTGAGTGCTTCTTCACAACTTCCTTGACGCGCTTCTCCTCACAGTATTCGGTCTGATCTTCTTTGAGGTGAAGGATTACACGTGTGCCTCTGCCAATGGACTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249721 lncRNA downstream 20775 15110241 ~ 15111442 (-) False rps29
TU249700 lncRNA downstream 63933 15063838 ~ 15068284 (-) True LOC120546290
XR_005636854.1 lncRNA downstream 63938 15064248 ~ 15068279 (-) False LOC120546290
TU249695 lncRNA downstream 90681 15041309 ~ 15041536 (-) True G184381
TU249654 lncRNA downstream 430036 14699684 ~ 14702181 (-) True G184354
TU249753 lncRNA upstream 30421 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA upstream 31403 15170118 ~ 15173640 (-) True G184417
TU249756 lncRNA upstream 34996 15173711 ~ 15174119 (-) True G184420
TU249791 lncRNA upstream 144534 15283249 ~ 15288885 (-) True G184452
XR_005636867.1 lncRNA upstream 557785 15696500 ~ 15700999 (-) True LOC120546341
XM_039782226.1 mRNA downstream 3724 15121829 ~ 15128493 (-) True wdr20b
XM_039782229.1 mRNA downstream 3724 15124567 ~ 15128493 (-) False wdr20b
XM_039782227.1 mRNA downstream 7072 15121829 ~ 15125145 (-) False wdr20b
XM_039782493.1 mRNA downstream 20738 15110240 ~ 15111479 (-) True rps29
XM_039781333.1 mRNA downstream 202555 14792113 ~ 14929662 (-) True LOC120546409
XM_039782233.1 mRNA upstream 60714 15199429 ~ 15201090 (-) True LOC120546952
XM_039782806.1 mRNA upstream 133463 15272178 ~ 15276579 (-) True slc25a47a
XM_039782715.1 mRNA upstream 209045 15347760 ~ 15384587 (-) False syndig1l
XM_039782714.1 mRNA upstream 209045 15347760 ~ 15384587 (-) True syndig1l
XM_039781456.1 mRNA upstream 467353 15606068 ~ 15652295 (-) True ino80
TU249614 other downstream 553048 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 633847 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1641089 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1664152 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 1916393 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 650199 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1351935 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1691081 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2623241 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2623683 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile