RNA id: XM_039782493.1


Basic Information

Item Value
RNA id XM_039782493.1
length 345
RNA type mRNA
GC content 0.50
exon number 3
gene id rps29
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15110240 ~ 15111479 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGGCATCTAAACGCTTCATTTGCGCACGCGCAGCCTTCGTTCTTCCTTTCCGACACTCGAGCGAGAGAGACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCCAGAAAATTCGGACAGGGATCCCGATCCTGTCGAGTATGCTCGAACAGACATGGTCTGATCCGTAAATACGGGCTCAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTCAAGCTGGACTAAATGTCACGTCCTCGGATGGGTCCAGCAATCTCTGGAAAGCTGGCCAAGATGGGATAATTCAGCACtgcaaataaatgtgtttttttgtccaaactaaa

Function

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0009790 embryo development biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02980 RP-S29e, RPS29; small subunit ribosomal protein S29e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249700 lncRNA downstream 41956 15063838 ~ 15068284 (-) True LOC120546290
XR_005636854.1 lncRNA downstream 41961 15064248 ~ 15068279 (-) False LOC120546290
TU249695 lncRNA downstream 68704 15041309 ~ 15041536 (-) True G184381
TU249654 lncRNA downstream 408059 14699684 ~ 14702181 (-) True G184354
TU249656 lncRNA downstream 408059 14699684 ~ 14702181 (-) False G184354
TU249728 lncRNA upstream 20738 15132217 ~ 15138715 (-) True G184404
TU249730 lncRNA upstream 23990 15135469 ~ 15138313 (-) True G184406
TU249753 lncRNA upstream 57657 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA upstream 58639 15170118 ~ 15173640 (-) True G184417
TU249756 lncRNA upstream 62232 15173711 ~ 15174119 (-) True G184420
XM_039781333.1 mRNA downstream 180578 14792113 ~ 14929662 (-) True LOC120546409
XM_039782854.1 mRNA downstream 403804 14703467 ~ 14706436 (-) True fkbp3
XM_039782856.1 mRNA downstream 430147 14677540 ~ 14680093 (-) True arf6a
XM_039782416.1 mRNA downstream 442639 14657177 ~ 14667601 (-) True LOC120547045
XM_039782748.1 mRNA downstream 497299 14606051 ~ 14612941 (-) False naa30
XM_039782226.1 mRNA upstream 10350 15121829 ~ 15128493 (-) True wdr20b
XM_039782227.1 mRNA upstream 10350 15121829 ~ 15125145 (-) False wdr20b
XM_039782229.1 mRNA upstream 13088 15124567 ~ 15128493 (-) False wdr20b
XM_039782233.1 mRNA upstream 87950 15199429 ~ 15201090 (-) True LOC120546952
XM_039782806.1 mRNA upstream 160699 15272178 ~ 15276579 (-) True slc25a47a
TU249614 other downstream 531071 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 611870 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1619112 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1642175 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 1894416 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 677435 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1379171 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1718317 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2650477 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2650919 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile