RNA id: XM_039782416.1


Basic Information

Item Value
RNA id XM_039782416.1
length 3610
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120547045
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14657177 ~ 14667601 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTGTATCCTATGCTACTGAACAGATATGTTGCGATACTAGCTACACACTAGCATTAAAGCCACGAAAAGATGCGCCTTTACGggattaaaacaataaaacaaacaacgaGAAGTCTGGAAAAACTTTGCCCAACTGTGCCCAAACTTTGATAGGCTACAACCCAAATCACTTCCCTTCAGTTTCGAGTGTGTTAGCATTGTTTTATCTCACCATTATTGCCATTGGacgcgtttttttttcttctggagCAGTCCAGTCTGATGAATTCACCGAAAAAAGACGGCGATGATGATGTGCCCGTTAAAGACCCGGTAAAATACGGCGAATTGGTCATTTTGGGgtACAATGGCTCTCTTCCAAGCGGAGACCGTGGGCGTAGAAAGAGCCGCTTCGCTCTGTATCGAAGGGCCAAGGCCAACGGTGTCAAACCCAGCGCTGTGCACATCCTCAACACACCACAGGACAGCaagGCTGTCcacagcagggggcagcacaGCATCTCTTTTACTCTGTCCCGTAACCAGACAGTGGTGGTGGAGTACTGCCATGACAACAACACAGACATGTTCCAGATTGGACGCTCCACAGAAAGTCCCATTGACTTTGTGGTGACAGACACCTCCGGAGGGGGGAAGGAGGGGGAGGACCCCTCCATTGCTCCCAGCACCATCTCGCGTTTTGCCTGCAGAGTGGTGTGTGAACGCAACCCACCTTACACTGCACGTATCTACGCCGCTGGCTTTGACTCTTCCAAAAATATCTTCTTAGGGGAGAAAGCAACAAAATGGAAAAACCCTGATGGGCATATGGACGGCCTGACCACCAACGGGGTGCTAGTGATGCACCCGGAGGGGTTCCCAGAGGACACTGAGCAGATGATTTTGATCGACTGTATGGTGTTTCGTCCATTATTATCTCTGCAGGCCGTAGGGGAGAGCAGTGCGCTACGTGACGGCTCCCTGGTTGACCTGTGCGGTGCCACCCTGCTGTGGCGTACAGGCGAGGGGCTCATGCGCGCTCCCACCCTGCGTCACCTGGAAGCACTTCGCCAGGAGCTCAACGCGTCCCGGCCCCAGTGTCCCGTCGGCCTCAGCACGCTGGCCTTCCCCAGCCTGCCGCGCAGCCACAGCCTTGAAGAGCGTCAGCCTTGGGTCTACCTCGCTTGCGGCCATGTCCATGGACGCCACGACTGGGGCCAGAGATCTGAGGGAGTGGAGGTGCCGGGAGAGGGCGAGGGTTCCACAACCCGCCGAGAATGTCCCCTGTGCAGGAGCGTGGGTCCCTACGTGCCCCTGTGGCTGGGCTGTGAGCCTGCTGTGTACGTGGACGCCGGAGCTCCTACTCACGCTTTTGTGCCGTGCGGCCACGTCTGCTCCGAGAGGACAGCCAGGTATTGGGCTGAGACCCCGCTTCCTCACGGGACGCACGCCTTCAGACCCGTGTGCCCCTTCTGCTCCTCTGCCCTCAGCACCCCCGGCTGGACGCGGCTCATCTTCCAGGGCCCCATCGACTAGTCGCCACTCCTCATCAACCACTCTCACAGTAACAGAAAGACGCCTGGGCTACATTCATGTTGCAGACGTGGGTCAGTGTTCAGTAGGGATAGGTAATTGATTAGGAACGCATGTGTGCTCTACACTCGGGCCACACACTGTGTATAACAAACACTGTCCAACGTTGTTACTGAATGGAGCTCGAAGCTGAATCCTTCCCGTTCTTTATCCTTCAATTCTTGTTGACTGgtataagatctggtgaataggTGCAAAATAACAGAATAATCAATAGTGTCATGTGGACAGTATTTACTCTAAACTCTAACCCTCTGTCAGGCATGATTGTGCTGTTTTTCATTCCAACCAAACCCTACACTTTCACTGATTACCTAACCTTCAAGTCAAATTGTATATAGACACGAGCTTAAACGATGCTGCTTGACCCtttttaaacaattatttttactCCATTATCAAATGACTCAACCTCCCACAAATTTTAAACGATGTCATACGAAACAAACCGATCCAAACACTTTTTATTTGTCTCTTTCAGAAGCCATGTATAAAACGACAAGTAgctttttgcacacaaaaaaaaaaaaggagtagcCTTTTTACTCAGTTCCTCTGCAGCGTCTTACACGTCTGCAGCGACCGCGTGTCCTTAACTCGGTGAAACGCCGCCTCTTGCACTTCTCGGCCTGACATCCGACCACTTCTTAATTTCGAAAACATTGTTACTGTAATTGTCGTGAAATGCTCGCCACTCATCAAACAACACAACCCGCCTGGTCTCAGCTTCTGCATAAACCACCTTCGCCTTTATTTCAAACCAAGTCTCTTTATAGATTTGCACGCTCACTTTCCTGTCTTCCTTCCCTGAATGACCAGCTGATTTATATTCATAGCTGTATTCTCAGCCGGCCATGTTAACTACTTATGGTAAATGTGCTTTACAAGGTGAGATCAGAGGCGTGTGCTTCGATCTAGCTTTTCAGGTTCCCAGCGATTCATGAAGGGGAAATTATTAACCATCATAAAATGAGTATATGCAGTTTTCATCTTTTGTCTTCGTGCATCATTTTTAGTGTGAAATCTATGCAGAGAGAGACCCCATAAATGAGACCCCCTTGTGTAGTATTAGGTTGGAATGAAAAGCTGCAGACTCTCTGATTATCTCTGAAGGGAACACTACACGCTGTATGACCGCACCACAAAGAATTCACCTCTTAAGGCCAGATCTCATCCTGATTATCAAGCAGACCGAGGATAAGCACGGGCTGGGAATGAAACTGGGTAAAATCCACTATATAACTCTGCAGCAATAATAGCACTCCCATATATATAAGCTAGATGTATCGCTCTGTTTAGCCAAGTGATAGGTCGGCGGTCGCATTGGACATAGCTGAAATGGTTTCCAGGTTAAGGGCTCAACCAGAGGCGTGTTCAATATCAGGATTTATTTCAtcgtggtgttgtgtgtgtatgtgtgtgtgtgtctgtgtgtgtgtgtgcgcgtgtgtgatGTAACCAAAGCACTAGAATTTAAAGATGAGCAACTGAATCAGTGATTAAACACACAACATGTATTTAAATACTCATTTTAGATGCATTAATAGCCTAAGCATGCTAACAGAGATTAGCATGTTTAGGCTGCAGAGGAATACATCAGCTGTCACAAAAGGACATGTTTTGACGCTCGTGTTGTGTTAATTTGAACACACTTCTGGTTACTGAATTATGTGAAACAGGGTCCATGTTTGCATGGTGGAGTGTCAAAAAGGTTTGACCTTGCATAACCTCAAAAGAGAActtcttttttgtttcaaaGAAAACTATTTTGTTAGAAAATGGGGAGGGATTTATTTGGGGGAAGCGGGAGGAATTCTTTTAGATgttcagtgtttaaaaaaacaactatttttctaactgataattgGTTTTAGTTAACTAATTGTTACTCAGTGTATGTTTCCGAATATTCTCGTGTGGTATCTAGGAGAGCTTGTGAGTGAGACAACATTGCCAACACTGTgtccaacaaacacacacttaacaCACTGCtaccgttaaaaaaaaaaaaaagagaaaaaaaaaaaacattgccc

Function

GO:

id name namespace
GO:0008063 Toll signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249640 lncRNA downstream 930 14655657 ~ 14656247 (-) True G184346
TU249589 lncRNA downstream 163609 14491099 ~ 14493568 (-) True G184306
TU249570 lncRNA downstream 218222 14432231 ~ 14438955 (-) False G184295
TU249571 lncRNA downstream 218222 14432231 ~ 14438955 (-) True G184295
TU249567 lncRNA downstream 225005 14427804 ~ 14432172 (-) True G184293
TU249658 lncRNA upstream 4293 14671894 ~ 14677060 (-) True G184356
TU249666 lncRNA upstream 21705 14689306 ~ 14689940 (-) True G184360
TU249654 lncRNA upstream 32083 14699684 ~ 14702181 (-) True G184354
TU249656 lncRNA upstream 32083 14699684 ~ 14702181 (-) False G184354
TU249695 lncRNA upstream 373708 15041309 ~ 15041536 (-) True G184381
XM_039782747.1 mRNA downstream 44231 14571380 ~ 14612946 (-) True naa30
XM_039782745.1 mRNA downstream 44231 14571659 ~ 14612946 (-) False naa30
XM_039782748.1 mRNA downstream 44236 14606051 ~ 14612941 (-) False naa30
XM_039782749.1 mRNA downstream 64942 14584030 ~ 14592235 (-) True actr10
XM_039782750.1 mRNA downstream 90646 14561407 ~ 14566531 (-) True cipcb
XM_039782856.1 mRNA upstream 9939 14677540 ~ 14680093 (-) True arf6a
XM_039782854.1 mRNA upstream 35866 14703467 ~ 14706436 (-) True fkbp3
XM_039781333.1 mRNA upstream 124512 14792113 ~ 14929662 (-) True LOC120546409
XM_039782493.1 mRNA upstream 442639 15110240 ~ 15111479 (-) True rps29
XM_039782226.1 mRNA upstream 454228 15121829 ~ 15128493 (-) True wdr20b
TU249614 other downstream 78008 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 158807 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1166049 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1189112 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 1441353 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 1121313 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1823049 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2162195 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 3094355 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 3094797 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile