RNA id: TU249700


Basic Information

Item Value
RNA id TU249700
length 1530
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC120546290
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15063838 ~ 15068284 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATTGCACACGAAAAACCCGAAGGAGAGAAGCCAGATGAAATTAATATCCAGagataaatatttgtgtgtcaAACAGTAGGCTAAGATGCGGCCATTTTATTGACACTGTAAATGGACAGTAGCCTACTCTggacaacaaaactgttaagTGAAGTTTGAAAGGAGTTGGACTCTGGCTTAAGTCCAAACTAATTTAAAAGTGAACTAACCTACATGACTGAAATTAAACAACTGGGAGAGTTAGCTTTTTTTGCAGTAACGTTActgacattagctaacgttacttttaGTTTGCTAGCACATGCAGCGTTGGAGGCCAATGGAGGGTGGAAATGACGATGTCTGTCAACAACTCCACAGAAGTACCATGGCAGCACCAAGTGCAGAAGTTAGCTACATGACATGGCTATTTTGACCACTTCGCCTCCATGAATGGAAGAAGAGACGACTTTAGCTTCAGAGAGTGATGATCATGCCATGCACAGTCCCAATCTGGTCAGGTGTACTCAAGGCTGAGCACTAAAGAGGAGGAGGGCTAATGGGCTATTTCTCACCTCTGTAGAGCATAACTCTGCCATCTGCTGCAGGGAGTCTCTCTTAGCGCCTCGCTCCTCTCTCTGGAACAGCGAATGGACAAATGGCAACCTGAGAGTCGCACTCAGCAGCTGAATACAGGACTGGGCGCACATGGACTTATTGCTATTTTCCCTTGGCTCATCTTGTCCCTCCGCCACTTCCTCTCACCACCTTTTGTCAATTTTACTTGTATAGCCCAATGTTGCGAATCACAAATTTGCCTGaaggggctttacaatctgtacggGATACAACACTTTCTGAACCCATGATTAGGATGAGGAAGAACTCCTCCAGAAAAAAACTTAAACGGGGACGAAAAGGTGGAAGAAACCTCAGGAAAAGCCACAGAGCAGGGGTCCCTCTTctaggacagacagacatgcaacGGATGTCTTTCTCTGTTGCTCTGACTTTTCTTACTGTGTCCTCCAAAAAATATTGACACAGTCGCATGCATGCACAAGCAAACTGATGCTTCTTCCAAACTTGTTTGAGTTTTTTAAGAAATTAAATGCCTAATTAAAAGTCTTGAAACTACATAGACTGCAACCTTTTTCTGACAAAAGCATCACCCATCTAGAAATACCCAAAACAACTTGCAGTACATTTATCATTTGACGGTAAGTGGGTGTTCCTGGGTGTTTTTGTCGCTGTGTCACGTTTGAGCACTCGACTACAAAACTGGGTGAACCCAACTTCACAACATGCTCCTCACTTCTCCATCCAGTAATTTTCTCCAACTTGTTATAGACGTCTGAACCCTGGCCCCATGCTAAAATAAGCCGAGGCAGATCAGGCGTCCGCTTTGTGCCTCGGCCCACTCTGTTAAGTCTTCTGCGGTGAGGACAGATAAGCAAACCTGGGAGAGATGCTATCGCACCGCTGGGTTAAAGAAACTGACAACTCCATCACCCCTACTCAGATCAGAAGGGAACTGAAGAGCAATGCA

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249695 lncRNA downstream 22302 15041309 ~ 15041536 (-) True G184381
TU249654 lncRNA downstream 361657 14699684 ~ 14702181 (-) True G184354
TU249656 lncRNA downstream 361657 14699684 ~ 14702181 (-) False G184354
TU249666 lncRNA downstream 373898 14689306 ~ 14689940 (-) True G184360
TU249658 lncRNA downstream 386778 14671894 ~ 14677060 (-) True G184356
TU249721 lncRNA upstream 41957 15110241 ~ 15111442 (-) False rps29
TU249728 lncRNA upstream 63933 15132217 ~ 15138715 (-) True G184404
TU249730 lncRNA upstream 67185 15135469 ~ 15138313 (-) True G184406
TU249753 lncRNA upstream 100852 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA upstream 101834 15170118 ~ 15173640 (-) True G184417
XM_039781333.1 mRNA downstream 134176 14792113 ~ 14929662 (-) True LOC120546409
XM_039782854.1 mRNA downstream 357402 14703467 ~ 14706436 (-) True fkbp3
XM_039782856.1 mRNA downstream 383745 14677540 ~ 14680093 (-) True arf6a
XM_039782416.1 mRNA downstream 396237 14657177 ~ 14667601 (-) True LOC120547045
XM_039782748.1 mRNA downstream 450897 14606051 ~ 14612941 (-) False naa30
XM_039782493.1 mRNA upstream 41956 15110240 ~ 15111479 (-) True rps29
XM_039782226.1 mRNA upstream 53545 15121829 ~ 15128493 (-) True wdr20b
XM_039782227.1 mRNA upstream 53545 15121829 ~ 15125145 (-) False wdr20b
XM_039782229.1 mRNA upstream 56283 15124567 ~ 15128493 (-) False wdr20b
XM_039782233.1 mRNA upstream 131145 15199429 ~ 15201090 (-) True LOC120546952
TU249614 other downstream 484669 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 565468 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1572710 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1595773 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 1848014 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 720630 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1422366 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1761512 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2693672 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2694114 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile